Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0274
         (670 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      27   0.11 
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      27   0.11 
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    21   6.9  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   9.1  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 19/85 (22%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
 Frame = +2

Query: 86  KRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM--KDKTEWEQKAAKAKE-H 256
           K+P++A+ML++   R ++ +E        I +  G  W ++  +++ ++ + A + ++ H
Sbjct: 480 KKPLNAFMLYMKEMRAKVVAECTLKESAAINQILGRRWHALGREEQAKYYELARRERQLH 539

Query: 257 MQKT*NLTMPMAVVAKGAKRRLKNE 331
           MQ   + +   A   +G KR+ K +
Sbjct: 540 MQLYPDWS-SRANATRGKKRKRKQD 563


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 19/85 (22%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
 Frame = +2

Query: 86  KRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM--KDKTEWEQKAAKAKE-H 256
           K+P++A+ML++   R ++ +E        I +  G  W ++  +++ ++ + A + ++ H
Sbjct: 372 KKPLNAFMLYMKEMRAKVVAECTLKESAAINQILGRRWHALGREEQAKYYELARRERQLH 431

Query: 257 MQKT*NLTMPMAVVAKGAKRRLKNE 331
           MQ   + +   A   +G KR+ K +
Sbjct: 432 MQLYPDWS-SRANATRGKKRKRKQD 455


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 58  PDGKNFEIIFELVHN 14
           P G NFEI FE  +N
Sbjct: 319 PAGSNFEIGFENYYN 333


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -1

Query: 322  EPSFRPLRHHRHWHCK 275
            +PS+RP     HW  K
Sbjct: 1171 KPSYRPPSTTNHWQTK 1186


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,018
Number of Sequences: 336
Number of extensions: 2133
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17385535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)