Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0274
         (670 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A10.09c |||High-mobility group non-histone chromatin prote...    42   6e-05
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    39   7e-04
SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide mc...    37   0.002
SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide mc...    37   0.002
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   3.2  
SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces po...    26   5.6  
SPCP20C8.02c |||S. pombe specific UPF0321 family protein 1|Schiz...    25   9.9  

>SPAC57A10.09c |||High-mobility group non-histone chromatin
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 42.3 bits (95), Expect = 6e-05
 Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
 Frame = +2

Query: 68  KMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM--KDKTEWEQKAA 241
           K  + PKR MSA+M +    RE++K++NP     ++    G+ WK +   ++  +E+KA 
Sbjct: 11  KDPNTPKRNMSAFMFFSIENREKMKTDNPDATFGQLGSLLGKRWKELTSTEREPYEEKAR 70

Query: 242 KAKEHMQK 265
           + KE  ++
Sbjct: 71  QDKERYER 78


>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 38.7 bits (86), Expect = 7e-04
 Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 5/71 (7%)
 Frame = +2

Query: 56  RKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLR---VTEIAKKGGEIWKSMK--DKT 220
           ++K +   +PKRP SAY L+  + R +IK E+ G +   V E+ K   E W S+   D+ 
Sbjct: 108 KRKARDPAQPKRPPSAYNLFQKNQRSEIK-ESLGEKSNDVKEVNKAMHEKWGSLSEDDRK 166

Query: 221 EWEQKAAKAKE 253
            +E++A+K +E
Sbjct: 167 TYEEEASKLRE 177


>SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide
           mc|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 181

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 13/52 (25%), Positives = 30/52 (57%)
 Frame = +2

Query: 50  AIRKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKS 205
           ++RK    T++  RP +A++L+       +   NP +  ++++K  GE+W++
Sbjct: 92  SLRKDTTSTERTPRPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRN 143


>SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide
           mc|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 181

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 13/52 (25%), Positives = 30/52 (57%)
 Frame = +2

Query: 50  AIRKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKS 205
           ++RK    T++  RP +A++L+       +   NP +  ++++K  GE+W++
Sbjct: 92  SLRKDTTSTERTPRPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRN 143


>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 126 ALFNHSMYADIGRFGLSVILTFFLMAKILK*FLNW 22
           A+++H  Y D+  FGL+    F +M  +   FL+W
Sbjct: 62  AVYHHVGYKDVSTFGLA--YGFLIMMSLRTCFLSW 94


>SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 235

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 252 SLALAAFCSHSVLSFIDFQISP 187
           +L L A C +S L+FI +QI P
Sbjct: 173 TLYLVALCYYSYLTFIGYQILP 194


>SPCP20C8.02c |||S. pombe specific UPF0321 family protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 111

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -2

Query: 267 VFCICSLALAAFCSHSVLSFIDFQISPP 184
           +FCIC + +    +   L+F+D+   PP
Sbjct: 4   LFCICCVFIKLVLAEVNLTFVDYAKLPP 31


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,059,895
Number of Sequences: 5004
Number of extensions: 34499
Number of successful extensions: 95
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)