Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0274
(670 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0261 + 27243898-27243938,27244068-27244157,27244293-272443... 52 4e-07
01_01_0605 + 4497308-4497472,4497719-4497904,4498898-4499003,449... 51 7e-07
08_01_0008 - 65366-65497,65588-65759,65846-65972,66058-66140,662... 50 1e-06
09_06_0203 + 21555747-21555805,21555862-21555939,21556034-215560... 48 7e-06
05_01_0562 + 4907937-4907990,4908890-4909075,4909180-4909285,490... 48 9e-06
02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217 47 2e-05
04_04_0814 + 28266590-28266615,28266780-28266860,28266986-282670... 40 0.002
01_06_0175 + 27229878-27230056,27231102-27231159,27231230-272312... 38 0.010
09_01_0004 - 133130-133897 29 3.3
12_02_0398 - 18586985-18587480,18587669-18587687,18588317-185885... 29 4.4
04_04_1265 - 32231511-32231813,32231906-32232024,32232511-322327... 28 5.9
02_05_1336 + 35773629-35773856,35773931-35774085,35774217-357745... 28 5.9
02_01_0618 - 4629776-4630037,4630188-4630330,4631200-4631254,463... 28 5.9
12_01_0013 - 99290-99299,99593-99703,100085-100587,100925-100995... 28 7.7
11_01_0283 - 2095291-2095566,2095962-2096348,2096523-2096881,209... 28 7.7
11_01_0013 - 103484-103493,103787-103897,104279-104781,105119-10... 28 7.7
>02_05_0261 +
27243898-27243938,27244068-27244157,27244293-27244350,
27244441-27244485,27244778-27244855,27244940-27245041,
27245150-27245173
Length = 145
Score = 52.0 bits (119), Expect = 4e-07
Identities = 30/97 (30%), Positives = 54/97 (55%), Gaps = 4/97 (4%)
Frame = +2
Query: 56 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLR-VTEIAKKGGEIWKSM--KDKTEW 226
RKK + KPKRP SA+ ++++ R++ ++ +P + V ++K GE W++M ++K +
Sbjct: 24 RKKAAASGKPKRPPSAFFVFMSEFRQEYQAAHPDNKSVAAVSKAAGEKWRAMSEQEKAPY 83
Query: 227 EQKAAKAKEHMQKT-*NLTMPMAVVAKGAKRRLKNEG 334
KA + K+ +KT N + +K AK EG
Sbjct: 84 VDKAGQKKQDYEKTKANFDKKESTSSKKAKTHDDGEG 120
>01_01_0605 +
4497308-4497472,4497719-4497904,4498898-4499003,
4499062-4499216,4499341-4499424,4499498-4499589,
4499729-4499837,4499944-4500030,4500153-4500245,
4501144-4501341,4501481-4501632,4501724-4501874,
4501975-4502073,4502159-4502326,4502624-4502702,
4502870-4503000
Length = 684
Score = 51.2 bits (117), Expect = 7e-07
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Frame = +2
Query: 59 KKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM--KDKTEWEQ 232
KK K + PKR M+ +M + + R +K+ NP L TEIAKK GE+W+ M ++K + Q
Sbjct: 591 KKKKDPNAPKRAMTPFMYFSMAERGNMKNNNPDLPTTEIAKKLGEMWQKMTGEEKQPYIQ 650
Query: 233 KAAKAKEHMQK 265
++ K+ +K
Sbjct: 651 QSQVDKKRYEK 661
>08_01_0008 -
65366-65497,65588-65759,65846-65972,66058-66140,
66232-66329
Length = 203
Score = 50.4 bits (115), Expect = 1e-06
Identities = 26/60 (43%), Positives = 42/60 (70%), Gaps = 3/60 (5%)
Frame = +2
Query: 80 KPKRPMSAYMLWLNSAREQIKSENPGLR-VTEIAKKGGEIWKSM--KDKTEWEQKAAKAK 250
K KRP +A+ L+++ R++ K+E+P + V+ +AK+GGE WKSM +DK + KAA+ K
Sbjct: 91 KGKRPPTAFFLFMSDFRKEYKAEHPDNKSVSAVAKEGGERWKSMSDEDKKPYLDKAAELK 150
>09_06_0203 +
21555747-21555805,21555862-21555939,21556034-21556091,
21556191-21556235,21556514-21556549,21556855-21556935,
21557016-21557087,21557184-21557195
Length = 146
Score = 48.0 bits (109), Expect = 7e-06
Identities = 23/64 (35%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Frame = +2
Query: 29 KNYFKIFAIRKKV-KMTDKPKRPMSAYMLWLNSAREQIKSENPGLR-VTEIAKKGGEIWK 202
+ +F++ + K K +KPKRP SA+ +++ R+ K ++P ++ V+ I K GG+ WK
Sbjct: 16 RGWFRLSVRKTKAEKDPNKPKRPPSAFFVFMEQFRKDYKEKHPNVKQVSVIGKAGGDKWK 75
Query: 203 SMKD 214
SM D
Sbjct: 76 SMTD 79
>05_01_0562 +
4907937-4907990,4908890-4909075,4909180-4909285,
4909377-4909513,4909989-4910072,4910157-4910248,
4910358-4910466,4910554-4910640,4910737-4910829,
4911384-4911581,4911659-4911810,4911910-4912060,
4912174-4912272,4912362-4912535,4912680-4912758,
4912858-4912979
Length = 640
Score = 47.6 bits (108), Expect = 9e-06
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Frame = +2
Query: 59 KKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM--KDKTEW-E 229
KK K + PKR ++ +M + + R +K+ NP L TEIAKK GE W+ M ++K + E
Sbjct: 550 KKKKDPNAPKRAIAPFMYFSKAERANLKNSNPELATTEIAKKLGERWQKMTAEEKQPYVE 609
Query: 230 QKAAKAKEHMQKT 268
Q K + +++
Sbjct: 610 QSQVDKKRYAEES 622
>02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217
Length = 504
Score = 46.8 bits (106), Expect = 2e-05
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Frame = +2
Query: 56 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMK--DKTEWE 229
+KK K KPK+PMSAY ++ R + +E V EI + GE WK+M +K +E
Sbjct: 276 KKKEKDPSKPKQPMSAYFVYTQQRRAALVAEKK--NVPEIGRITGEEWKAMSEAEKAPFE 333
Query: 230 QKAAKAKEHMQ 262
A K +E Q
Sbjct: 334 AAARKQREEYQ 344
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = +2
Query: 77 DKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM--KDKTEWEQKAAKA 247
++PK+P S+++L+ AR Q+ E PG+ + + WK + +K W KAA+A
Sbjct: 412 NRPKKPASSFLLFSKEARRQLAEERPGVASSTLTALVSVKWKELGEAEKQAWNGKAAEA 470
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = +2
Query: 62 KVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM--KDKTEWEQK 235
K K + K+P AY+LW +IK E+P E++ G WK++ ++K +E++
Sbjct: 150 KGKAGHERKKPCPAYVLWCKDQWNEIKKESPDADFKEVSNALGAKWKALGAEEKQPYEER 209
Query: 236 AAKAKE 253
+ KE
Sbjct: 210 YRQEKE 215
>04_04_0814 +
28266590-28266615,28266780-28266860,28266986-28267043,
28267143-28267187,28268653-28268721,28268821-28268931,
28269038-28269046
Length = 132
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +2
Query: 38 FKIFAIRKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLR-VTEIAKKGGEIWKSMKD 214
FK RKK KPKR ++ + +L R Q ++P + V + K GE W++M D
Sbjct: 10 FKAAGKRKKAGGAGKPKRGLTPFFAFLAEFRPQYMEKHPNTKGVAAVTKAAGEKWRAMSD 69
Query: 215 K 217
+
Sbjct: 70 E 70
>01_06_0175 +
27229878-27230056,27231102-27231159,27231230-27231274,
27232711-27232791,27232884-27232922
Length = 133
Score = 37.5 bits (83), Expect = 0.010
Identities = 17/65 (26%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Frame = +2
Query: 80 KPKRPMSAYMLWLNSAREQIKSENPGLR-VTEIAKKGGEIWKSM--KDKTEWEQKAAKAK 250
+PK+P +A+ ++ R+ K ENP ++ + E+ K GE W +M +++ ++ A + +
Sbjct: 48 RPKKPPTAFFYFMEDFRKTYKEENPSVKSMQEVGKACGEKWNTMTFEERVKYYDIATEKR 107
Query: 251 EHMQK 265
+K
Sbjct: 108 AEYEK 112
>09_01_0004 - 133130-133897
Length = 255
Score = 29.1 bits (62), Expect = 3.3
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 276 LQCQWRWWRRGRKEGSKTREKG 341
L+C+ RWWRR R+ G G
Sbjct: 93 LRCRERWWRRRRRTGDAAEAAG 114
>12_02_0398 -
18586985-18587480,18587669-18587687,18588317-18588544,
18589699-18589966
Length = 336
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 5/27 (18%)
Frame = +3
Query: 276 LQCQWRWWR-----RGRKEGSKTREKG 341
LQC+ RWWR RGR G + R G
Sbjct: 21 LQCRERWWRRRPVHRGRGRGGRRRRSG 47
>04_04_1265 - 32231511-32231813,32231906-32232024,32232511-32232721,
32232870-32232942,32233329-32233603,32233684-32233831,
32233906-32234143,32234325-32234457,32234852-32235045,
32235114-32235218,32235332-32236640
Length = 1035
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = +3
Query: 216 KLNGNRKLPRPRSICKRPRILQCQWRWWRRGRKE 317
+L K+ P I P ++ C W W+ G+ E
Sbjct: 913 ELISGSKISSPHLIMGFPNLIACAWSLWKNGKAE 946
>02_05_1336 +
35773629-35773856,35773931-35774085,35774217-35774549,
35774615-35774927,35776992-35777168,35777281-35777397,
35777532-35777698,35777800-35778024,35778127-35778448,
35778542-35778786,35778993-35779131,35779212-35779304,
35779509-35779577
Length = 860
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -2
Query: 243 LAAFCSHSVLSFIDFQISPPFLAISVTLKPGFSDFI 136
L F + + S + + PPF+A +V + PG +F+
Sbjct: 64 LQGFLGYVISSTQEAAVLPPFVAFAVRMNPGIWEFV 99
>02_01_0618 -
4629776-4630037,4630188-4630330,4631200-4631254,
4631539-4631603,4631714-4631857,4632141-4632194,
4632363-4632410,4632466-4632541,4632624-4632722,
4633000-4633097,4633615-4633719,4633816-4633924,
4634137-4634252,4634332-4634496
Length = 512
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -2
Query: 189 PPFLAISVTLKPGFSDFICSLALFNHSMYADIGRF 85
PP + S L G +C + NH YAD GRF
Sbjct: 45 PPAASSSSLLPVGRKPRVCVPGVPNHLTYADFGRF 79
>12_01_0013 -
99290-99299,99593-99703,100085-100587,100925-100995,
101413-101491,102336-102956
Length = 464
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -1
Query: 133 FPRAV*PQHVCGHRTLRLVRHFDFFPDGKNFEIIFELVHN 14
FPR+ + C H T + R + PDG+ EI++ HN
Sbjct: 320 FPRSY---YKCTHPTCPVKRKVEMTPDGRIAEIVYNGEHN 356
>11_01_0283 -
2095291-2095566,2095962-2096348,2096523-2096881,
2097275-2097398,2097480-2097548,2098536-2098584,
2099185-2099299,2099823-2099872,2099969-2100106,
2101136-2101197,2102066-2102180,2103433-2103664,
2103748-2103826,2103925-2103993,2104079-2104171,
2104577-2104622,2105223-2105268,2105354-2105411,
2105577-2105615,2105712-2105783,2105930-2106021,
2106824-2106923
Length = 889
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/49 (28%), Positives = 28/49 (57%)
Frame = +2
Query: 29 KNYFKIFAIRKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEI 175
KNY+K +R+K + ++P+ P + + A+E+ + +NP TE+
Sbjct: 357 KNYYKEKMMRRKEEKKEEPETPR-----YRDRAKERREDQNPDYEPTEL 400
>11_01_0013 -
103484-103493,103787-103897,104279-104781,105119-105189,
105607-105685,106530-107153
Length = 465
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -1
Query: 133 FPRAV*PQHVCGHRTLRLVRHFDFFPDGKNFEIIFELVHN 14
FPR+ + C H T + R + PDG+ EI++ HN
Sbjct: 321 FPRSY---YKCTHPTCPVKRKVEMTPDGRIAEIVYNGEHN 357
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,839,822
Number of Sequences: 37544
Number of extensions: 215837
Number of successful extensions: 702
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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