Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0274
(670 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12646| Best HMM Match : SSrecog (HMM E-Value=0) 89 2e-18
SB_42643| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 2e-07
SB_33348| Best HMM Match : HMG_box (HMM E-Value=3.2e-34) 53 2e-07
SB_21901| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 4e-07
SB_13764| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 7e-06
SB_23256| Best HMM Match : HMG_box (HMM E-Value=3.3e-22) 48 7e-06
SB_26162| Best HMM Match : HMG_box (HMM E-Value=1.5e-31) 48 9e-06
SB_18968| Best HMM Match : HMG_box (HMM E-Value=1.2e-19) 47 1e-05
SB_53304| Best HMM Match : HMG_box (HMM E-Value=1.9e-32) 47 1e-05
SB_40969| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_15122| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 4e-05
SB_24989| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 6e-05
SB_16422| Best HMM Match : HMG_box (HMM E-Value=8.7e-26) 45 6e-05
SB_25642| Best HMM Match : HMG_box (HMM E-Value=1.3e-29) 44 9e-05
SB_10678| Best HMM Match : HMG_box (HMM E-Value=1.3e-29) 44 9e-05
SB_41131| Best HMM Match : HMG_box (HMM E-Value=4.1e-28) 44 1e-04
SB_29734| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_3516| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_31139| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_37758| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_8014| Best HMM Match : HMG_box (HMM E-Value=0.00031) 40 0.001
SB_2908| Best HMM Match : HMG_box (HMM E-Value=1.5e-08) 40 0.002
SB_1832| Best HMM Match : HMG_box (HMM E-Value=1.7e-22) 40 0.002
SB_52386| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31) 39 0.004
SB_16481| Best HMM Match : HMG_box (HMM E-Value=1.2e-08) 36 0.030
SB_57274| Best HMM Match : HMG_box (HMM E-Value=0.021) 36 0.039
SB_27742| Best HMM Match : HMG_box (HMM E-Value=1.3e-24) 36 0.039
SB_46509| Best HMM Match : HMG_box (HMM E-Value=4.2e-10) 35 0.069
SB_24670| Best HMM Match : DivIC (HMM E-Value=2) 35 0.069
SB_12182| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.069
SB_23680| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.37
SB_25298| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.49
SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.64
SB_44844| Best HMM Match : DUF164 (HMM E-Value=0.094) 29 4.5
SB_26361| Best HMM Match : fn3 (HMM E-Value=0) 29 4.5
SB_35177| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
>SB_12646| Best HMM Match : SSrecog (HMM E-Value=0)
Length = 783
Score = 89.4 bits (212), Expect = 2e-18
Identities = 37/65 (56%), Positives = 51/65 (78%)
Frame = +2
Query: 59 KKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDKTEWEQKA 238
KK K + PKR MSAYMLWLN R++IK +NPG+ VTE++K GE+WK++ DK++WE+KA
Sbjct: 534 KKKKDPNAPKRAMSAYMLWLNDTRQEIKDKNPGISVTEVSKVAGEMWKNLTDKSKWEEKA 593
Query: 239 AKAKE 253
A K+
Sbjct: 594 AIEKQ 598
>SB_42643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 557
Score = 52.8 bits (121), Expect = 2e-07
Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Frame = +2
Query: 65 VKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM--KDKTEWEQKA 238
VK + KRPM+A+M+W R +I ENP + +EI+K+ G WK + DK + ++A
Sbjct: 321 VKPVEHVKRPMNAFMVWSREERRKIAQENPKMHNSEISKRLGSEWKQLADDDKKPFVEEA 380
Query: 239 AKAK-EHMQK 265
K + +HM++
Sbjct: 381 KKLRAQHMKE 390
>SB_33348| Best HMM Match : HMG_box (HMM E-Value=3.2e-34)
Length = 179
Score = 52.8 bits (121), Expect = 2e-07
Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Frame = +2
Query: 65 VKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM--KDKTEWEQKA 238
VK + KRPM+A+M+W R +I ENP + +EI+K+ G WK + DK + ++A
Sbjct: 4 VKPVEHVKRPMNAFMVWSREERRKIAQENPKMHNSEISKRLGSEWKQLADDDKKPFVEEA 63
Query: 239 AKAK-EHMQK 265
K + +HM++
Sbjct: 64 KKLRAQHMKE 73
>SB_21901| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 192
Score = 52.0 bits (119), Expect = 4e-07
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Frame = +2
Query: 56 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM--KDKTEWE 229
+K+ K +KPKR +SAY ++N R+ +K +NP ++K GE+W M DKT+++
Sbjct: 93 KKQTKDPNKPKRCLSAYFHFINLKRDDVKKDNPNASGGALSKVLGEMWSKMTDDDKTQYQ 152
Query: 230 QKAAKAK 250
A K K
Sbjct: 153 DMAKKDK 159
Score = 46.8 bits (106), Expect = 2e-05
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Frame = +2
Query: 68 KMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM--KDKTEWEQKAA 241
K +KPK SAY +L RE+++ E + + +K E WK+M ++K + QKA
Sbjct: 7 KDPNKPKGAKSAYNFFLQDQREKLQREEGKFSLADFSKVSAEKWKNMSEEEKETFVQKAG 66
Query: 242 KAKEHMQKT*NLTMPMAVVAKGAKRRLK 325
K KE ++ P G K+R K
Sbjct: 67 KDKERFKEEMQSYTPPPSEESGKKKRKK 94
>SB_13764| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1099
Score = 48.0 bits (109), Expect = 7e-06
Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Frame = +2
Query: 62 KVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWK--SMKDKTEWEQK 235
K D+ KRPM+A+M+W R ++ +NP + +EI+K+ G WK S ++K + +
Sbjct: 782 KANSADRVKRPMNAFMVWSRERRRKMAQDNPKMHNSEISKRLGSEWKLLSEQEKRPYIDE 841
Query: 236 AAKAKE-HMQK 265
A + + HM++
Sbjct: 842 ARRLRAVHMKE 852
>SB_23256| Best HMM Match : HMG_box (HMM E-Value=3.3e-22)
Length = 523
Score = 48.0 bits (109), Expect = 7e-06
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Frame = +2
Query: 56 RKKV-KMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM--KDKTEW 226
RKK K + PK P++ Y+ +LN RE+++SENP L E+ + G +W + K +
Sbjct: 167 RKKAHKDVNAPKAPLTGYVRFLNEHREKVRSENPDLPFHEVTRILGNMWSQLPTPQKQLF 226
Query: 227 EQKAAKAKEHMQK 265
++A K KE K
Sbjct: 227 LEEAEKDKERYMK 239
>SB_26162| Best HMM Match : HMG_box (HMM E-Value=1.5e-31)
Length = 367
Score = 47.6 bits (108), Expect = 9e-06
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Frame = +2
Query: 86 KRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM--KDKTEWEQKAAKAK-EH 256
KRPM+++M+W R + ENP L EI+K G+ W + KDK + +KA + + H
Sbjct: 95 KRPMNSFMIWAKVMRRKFAEENPKLHNAEISKLLGKAWNELTTKDKRPFVEKAERLRIRH 154
Query: 257 MQK 265
M++
Sbjct: 155 MKE 157
>SB_18968| Best HMM Match : HMG_box (HMM E-Value=1.2e-19)
Length = 1204
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Frame = +2
Query: 56 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM--KDKTEWE 229
++K K+ +P +P+SAY ++ + I+ +NP + EIAK G++W+++ + K +
Sbjct: 916 KRKTKIEGEPPKPLSAYQIFFKETQAAIRLQNPSAQFGEIAKIVGQMWENLPEEQKKVYH 975
Query: 230 QKAAKAKEHMQK 265
K AK QK
Sbjct: 976 CKHETAKAEYQK 987
>SB_53304| Best HMM Match : HMG_box (HMM E-Value=1.9e-32)
Length = 398
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/49 (40%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Frame = +2
Query: 74 TDKP--KRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKD 214
T KP KRPM+A+M+W +AR ++ + P L E++K G++WK + D
Sbjct: 59 TQKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWKLLND 107
>SB_40969| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 374
Score = 46.0 bits (104), Expect = 3e-05
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Frame = +2
Query: 86 KRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWK--SMKDKTEWEQKAAKAKE-H 256
KRPM+ +M+W R QI ENPG+ ++K G WK S+++K + +KA E H
Sbjct: 9 KRPMNCFMVWSREKRCQILQENPGINNARLSKLLGMAWKKLSVEEKEPYIEKAKHLTEMH 68
Query: 257 MQK 265
+K
Sbjct: 69 KEK 71
>SB_15122| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 709
Score = 45.6 bits (103), Expect = 4e-05
Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Frame = +2
Query: 68 KMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWK--SMKDKTEWEQKAA 241
K K KRPM+++M+W SAR ++ + P + E++K G++W+ S +K + +AA
Sbjct: 106 KKDPKVKRPMNSFMVWAQSARRKLAEQYPHVHNAELSKMLGKLWRMLSAAEKQPYVDEAA 165
Query: 242 KA-KEHMQ 262
+ K H +
Sbjct: 166 RLDKRHKE 173
>SB_24989| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 44.8 bits (101), Expect = 6e-05
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Frame = +2
Query: 68 KMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKS--MKDKTEWEQKAA 241
K D KRPM+AYM+W R +I E P + +EI+K+ G W S + +K + ++A
Sbjct: 3 KPGDHIKRPMNAYMVWSRKERRRIAEECPRMLNSEISKRLGLEWNSLTLDEKQPYVEEAK 62
Query: 242 KAKEHMQK 265
+ +E +K
Sbjct: 63 RLRELHKK 70
>SB_16422| Best HMM Match : HMG_box (HMM E-Value=8.7e-26)
Length = 245
Score = 44.8 bits (101), Expect = 6e-05
Identities = 21/62 (33%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Frame = +2
Query: 74 TDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM--KDKTEWEQKAAKA 247
++K KRP++A++LW R I +ENP + +I++K G W+ + ++K + ++A K
Sbjct: 16 SEKIKRPLNAFILWSKKRRRVIANENPQMHNFDISRKLGLEWQKLTEEEKAYYFEEAKKL 75
Query: 248 KE 253
KE
Sbjct: 76 KE 77
>SB_25642| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)
Length = 267
Score = 44.4 bits (100), Expect = 9e-05
Identities = 17/41 (41%), Positives = 28/41 (68%)
Frame = +2
Query: 86 KRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM 208
KRPM+A+M+W + R Q+ +ENP L ++I+K G W+ +
Sbjct: 8 KRPMNAFMIWSSKKRRQLAAENPKLHNSQISKMLGTEWRKL 48
>SB_10678| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)
Length = 494
Score = 44.4 bits (100), Expect = 9e-05
Identities = 17/41 (41%), Positives = 28/41 (68%)
Frame = +2
Query: 86 KRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM 208
KRPM+A+M+W + R Q+ +ENP L ++I+K G W+ +
Sbjct: 8 KRPMNAFMIWSSKKRRQLAAENPKLHNSQISKMLGTEWRKL 48
>SB_41131| Best HMM Match : HMG_box (HMM E-Value=4.1e-28)
Length = 245
Score = 44.0 bits (99), Expect = 1e-04
Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Frame = +2
Query: 77 DKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM--KDKTEWEQKAAKAK 250
D KRP++++M+W R + ENP +R EI+K G+ W+ M +K + ++A + +
Sbjct: 8 DHVKRPLNSFMVWAKEKRRAMNRENPKMRNAEISKILGDEWRKMPESEKLPYTEEALRLR 67
>SB_29734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 44.0 bits (99), Expect = 1e-04
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Frame = +2
Query: 59 KKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWK--SMKDKTEWEQ 232
KK KRPM+A+M+W R ++ E+P + EI+K+ G+ WK S +K + +
Sbjct: 37 KKKSDMQHVKRPMNAFMVWSQIERRKMAEEHPDMHNAEISKRLGKRWKLLSESEKRPFVE 96
Query: 233 KAAKAK-EHMQ 262
++ + + HMQ
Sbjct: 97 ESERLRIRHMQ 107
>SB_3516| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 642
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Frame = +2
Query: 74 TDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMK--DKTEWEQKAAKA 247
T++ KRPM+A+M+W R ++ NP L E++K G W+++ K + +A +
Sbjct: 363 TERIKRPMNAFMVWAQVERRRLADANPELHNAELSKMLGLTWRALNSTQKRPFVDEAERL 422
Query: 248 K-EHMQ 262
+ +HMQ
Sbjct: 423 RLQHMQ 428
>SB_31139| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 315
Score = 43.2 bits (97), Expect = 2e-04
Identities = 26/57 (45%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Frame = +2
Query: 86 KRPMSAYMLWLNSAREQIKS-ENPGLRVTEIAKKGGEIWKSMKDKTEWEQKAAKAKE 253
KRPM+A+M+W + R +IKS E P + +EI+K G WK+MKD+ + + KAKE
Sbjct: 10 KRPMNAFMVW-SKERRRIKSQECPRMHNSEISKILGCEWKAMKDELK-QPYIEKAKE 64
>SB_37758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 382
Score = 43.2 bits (97), Expect = 2e-04
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 5/71 (7%)
Frame = +2
Query: 56 RKKVKMTDKPKRPMSAYMLW---LNSAREQIKSENPGLRVTEIAKKGGEIWKSM--KDKT 220
RKK +KPK P++ Y+ + LNS RE +K ++P L EI K G+ W S+ ++K
Sbjct: 185 RKKEYDLNKPKAPVTGYVHYVRFLNSRRESVKHQHPHLTFPEITKMLGQEWNSLLPEEKQ 244
Query: 221 EWEQKAAKAKE 253
++ +A + K+
Sbjct: 245 KFLDEAEEDKK 255
>SB_8014| Best HMM Match : HMG_box (HMM E-Value=0.00031)
Length = 406
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +2
Query: 77 DKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMK--DKTEWEQKA 238
D+ + + + LWL R+QI+ ENP + ++ K + WK + +K W +KA
Sbjct: 327 DRQTKKKNGFSLWLEENRDQIEEENPDIPDEDVVKIAMKTWKGLDSVEKKVWNEKA 382
>SB_2908| Best HMM Match : HMG_box (HMM E-Value=1.5e-08)
Length = 324
Score = 39.9 bits (89), Expect = 0.002
Identities = 13/50 (26%), Positives = 31/50 (62%)
Frame = +2
Query: 83 PKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDKTEWEQ 232
P++P+ YM + +Q+K++NP ++ +I K G++W+ + D + ++
Sbjct: 28 PEKPLMPYMRYSRKVWDQVKNQNPDFKLWDIGKIIGQMWRDLDDAEKQQE 77
>SB_1832| Best HMM Match : HMG_box (HMM E-Value=1.7e-22)
Length = 299
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +2
Query: 92 PMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM--KDKTEWEQKAAKAKEHMQK 265
P+SA+ LW N AR+ + NP + ++ KK WK + K K W +K QK
Sbjct: 230 PLSAFELWANQARKDLLVSNPDISAKKLKKKLKRKWKEIDEKGKKTWIKKEKTEMRKYQK 289
Score = 37.1 bits (82), Expect = 0.013
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Frame = +2
Query: 77 DKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKD---KTEWEQKAAKA 247
++PK P+++Y + R ++ + P L+ TE+A K + W+ M + K EQ +
Sbjct: 150 NQPKMPLTSYFRYCQKHRAKLAKKYPNLKSTELAAKLSKKWRKMSEERKKAYTEQYEEEK 209
Query: 248 KEH 256
KE+
Sbjct: 210 KEY 212
>SB_52386| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 384
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +2
Query: 80 KPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDKTE 223
K KRPM+A+M+W R I P EI+ + GEIW + + +
Sbjct: 100 KVKRPMNAFMIWARLHRSTIAKRYPQANNAEISIRLGEIWNDLSSEQQ 147
>SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31)
Length = 690
Score = 38.7 bits (86), Expect = 0.004
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Frame = +2
Query: 29 KNYFKIFAIRKKVKMTDKPKRPMSAYMLWLNSAREQI--KSENPGLRVTEIAKKGGEIWK 202
+ Y K K DKPKRP +AY L+L + R+++ K+ G ++ +A GE W+
Sbjct: 559 QRYLKESGKNDPKKDPDKPKRPPTAYFLFLAAFRKEMAGKALEDGKKIPSLA---GERWR 615
Query: 203 SMKDKTEWEQKAAKAKE 253
M D+ + +A+E
Sbjct: 616 EMSDEDKKPYTIQEAEE 632
Score = 35.5 bits (78), Expect = 0.039
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Frame = +2
Query: 56 RKKVKMTDKP--KRPMSAYMLWLNSAREQIKSEN-----PGLRVTEIAKKGGEIWKSMKD 214
RKK D P KR SAY+ + + R ++K+++ P + E+AK GE WK + D
Sbjct: 485 RKKKAKGDGPVVKRASSAYIHFTSDFRAKLKAKSAKSGTPLPKANEVAKLAGEEWKKLND 544
Query: 215 KTEWEQKAAKAKEHMQK 265
+ + + AKA+ Q+
Sbjct: 545 EQK-KPYVAKAEADKQR 560
>SB_16481| Best HMM Match : HMG_box (HMM E-Value=1.2e-08)
Length = 271
Score = 35.9 bits (79), Expect = 0.030
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Frame = +2
Query: 86 KRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM----KDKTEWEQKAAKAKE 253
K PM+A+M+ R+ S NPG+ +E +K G WK + KD E K +
Sbjct: 10 KSPMNAFMVCSRGKRKHYASINPGMHNSEFSKSLGPEWKMLTSEEKDPFIAEPKRLQRTS 69
Query: 254 HMQKT 268
H + T
Sbjct: 70 HARST 74
>SB_57274| Best HMM Match : HMG_box (HMM E-Value=0.021)
Length = 200
Score = 35.5 bits (78), Expect = 0.039
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +2
Query: 77 DKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM 208
D+ + + + LWL R+QI+ ENP + ++ K + WK +
Sbjct: 34 DRQTKKKNGFSLWLEENRDQIEEENPDIPDEDVVKIAMKTWKGL 77
>SB_27742| Best HMM Match : HMG_box (HMM E-Value=1.3e-24)
Length = 201
Score = 35.5 bits (78), Expect = 0.039
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +2
Query: 86 KRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDK 217
KRPM+A+M+W + R ++ + P + EI+K G W + ++
Sbjct: 10 KRPMNAFMVWSRTERRKLALKYPNMLNCEISKLLGAEWSRLSEE 53
>SB_46509| Best HMM Match : HMG_box (HMM E-Value=4.2e-10)
Length = 145
Score = 34.7 bits (76), Expect = 0.069
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +2
Query: 86 KRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWK--SMKDKTEWEQKA 238
KR S Y+L+ + R I+ E+P EI++ GE W+ S K E+E KA
Sbjct: 36 KRGQSGYLLFSHEMRGIIRKEHPEYAFGEISRLIGEEWRNASAARKAEYENKA 88
>SB_24670| Best HMM Match : DivIC (HMM E-Value=2)
Length = 152
Score = 34.7 bits (76), Expect = 0.069
Identities = 16/54 (29%), Positives = 31/54 (57%)
Frame = +2
Query: 101 AYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDKTEWEQKAAKAKEHMQ 262
AY +W + A++ + + L TE+A K ++ ++ ++ EWEQK K +E +
Sbjct: 9 AYSVWQH-AQQTLTKKREALVKTELAGKNEKLPQAQEEVKEWEQKVEKGQEDFE 61
>SB_12182| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1361
Score = 34.7 bits (76), Expect = 0.069
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +2
Query: 86 KRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWK--SMKDKTEWEQKA 238
KR S Y+L+ + R I+ E+P EI++ GE W+ S K E+E KA
Sbjct: 1269 KRGQSGYLLFSHEMRGIIRKEHPEYAFGEISRLIGEEWRNASAARKAEYENKA 1321
>SB_23680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 32.3 bits (70), Expect = 0.37
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 80 KPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMK 211
K KRP A+ + +++K ENP L+ EI K + W +++
Sbjct: 305 KHKRPTPAFFRFRQDYADKVKEENPHLKDAEIRKHLSDQWANLE 348
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/59 (23%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Frame = +2
Query: 83 PKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM--KDKTEWEQKAAKAKE 253
P++P + L++ +IK+EN G+ +I ++ G W+++ ++ E +K+ A++
Sbjct: 374 PRKPPRHFSLFMRENFAKIKAENQGMSNPDIMRELGAKWRNLPFSEREEIRRKSEDAQK 432
>SB_25298| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 824
Score = 31.9 bits (69), Expect = 0.49
Identities = 19/64 (29%), Positives = 33/64 (51%)
Frame = +2
Query: 74 TDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDKTEWEQKAAKAKE 253
T K +RP Y WL + Q+++E G R E+ ++ K++ + EQKAA+ ++
Sbjct: 128 TSKTRRPSLTYNEWLTEKKLQMQAE--GTRHEEVKTSKRKLSKTITYEQWLEQKAAENQQ 185
Query: 254 HMQK 265
K
Sbjct: 186 RHSK 189
>SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1202
Score = 31.5 bits (68), Expect = 0.64
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = +2
Query: 77 DKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM--KDKTEWEQKAAKAK 250
D +RPM+A+M++ R + ++P ++K GE W ++ ++K + AA+ K
Sbjct: 514 DHIRRPMNAFMIFSKRHRALVHQKHPHQDNRTVSKILGEWWYALGPEEKQSYNALAAQVK 573
Query: 251 E 253
E
Sbjct: 574 E 574
>SB_44844| Best HMM Match : DUF164 (HMM E-Value=0.094)
Length = 332
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +2
Query: 161 RVTEIAKKGGEIWKSMKDKTEWEQKAAKAKEHMQ 262
+ TE AKK E W+ +K + W+++ + + +Q
Sbjct: 241 KTTEEAKKAEERWQRLKTELNWDERYEETMKDLQ 274
>SB_26361| Best HMM Match : fn3 (HMM E-Value=0)
Length = 1898
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +2
Query: 119 NSAREQIKSENPGLRVTEIAKKGGEIWKSMKDKTEWEQKAAKAKE 253
NSA + +SE +R E + GE W + D EQK + +E
Sbjct: 246 NSAGDSPRSEQKLIRTEEGGESQGEGWGTAGDSPRGEQKLIRTEE 290
>SB_35177| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1293
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Frame = +2
Query: 140 KSENPGLRVT-EIAKKGGEIWKSMKDK--TEWEQKAAKAKEHMQK 265
K E+ L+ + + ++K GEI K++K+K E E KA+KA QK
Sbjct: 602 KKESYSLKKSGDSSRKNGEIEKNLKEKKAKEQEDKASKAAVKKQK 646
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,178,346
Number of Sequences: 59808
Number of extensions: 263029
Number of successful extensions: 1256
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 1227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1254
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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