Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0274
(670 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110490-14|CAB54448.2| 95|Caenorhabditis elegans Hypothetical... 62 5e-10
AF056576-1|AAC78598.1| 95|Caenorhabditis elegans high mobility... 62 5e-10
U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4 p... 61 6e-10
AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3... 58 4e-09
U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian ... 48 8e-06
Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical pr... 45 4e-05
U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying defe... 45 6e-05
U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying defe... 45 6e-05
U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying defe... 45 6e-05
U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying defe... 45 6e-05
AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain pr... 45 6e-05
U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian ... 44 1e-04
U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2... 43 2e-04
U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2... 43 2e-04
U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2... 43 2e-04
AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility... 43 2e-04
AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical... 35 0.045
Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical pr... 35 0.060
Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical p... 35 0.060
Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical pr... 35 0.060
Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical pr... 32 0.32
Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical p... 32 0.32
Z50797-9|CAL36516.1| 640|Caenorhabditis elegans Hypothetical pr... 32 0.32
AF043703-1|AAK21504.1| 437|Caenorhabditis elegans Posterior pha... 31 0.74
Z81118-10|CAB61029.1| 657|Caenorhabditis elegans Hypothetical p... 31 0.98
Z81118-1|CAB03329.1| 478|Caenorhabditis elegans Hypothetical pr... 31 0.98
Z77668-2|CAB61021.1| 657|Caenorhabditis elegans Hypothetical pr... 31 0.98
AJ000538-1|CAA04171.1| 657|Caenorhabditis elegans GluClalpha2A ... 31 0.98
AJ000537-1|CAA04170.1| 478|Caenorhabditis elegans GluClalpha2B ... 31 0.98
AC006769-1|AAF60590.2| 287|Caenorhabditis elegans Hypothetical ... 30 1.3
AC006722-17|ABP57812.1| 141|Caenorhabditis elegans Hypothetical... 30 1.3
AF098989-2|AAK18954.3| 346|Caenorhabditis elegans Hypothetical ... 28 6.9
AL117202-21|CAB55087.1| 370|Caenorhabditis elegans Hypothetical... 27 9.1
>AL110490-14|CAB54448.2| 95|Caenorhabditis elegans Hypothetical
protein Y48B6A.14 protein.
Length = 95
Score = 61.7 bits (143), Expect = 5e-10
Identities = 28/67 (41%), Positives = 40/67 (59%)
Frame = +2
Query: 62 KVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDKTEWEQKAA 241
K K + PKR MSA+ W+ RE+IK PG+ V ++AK G W + DK+ WE+KAA
Sbjct: 21 KAKDPNAPKRAMSAFFFWMQENRERIKK--PGMGVADVAKAAGVEWGKLTDKSRWEKKAA 78
Query: 242 KAKEHMQ 262
K+ +
Sbjct: 79 DDKKRYE 85
>AF056576-1|AAC78598.1| 95|Caenorhabditis elegans high mobility
group protein 1.1 protein.
Length = 95
Score = 61.7 bits (143), Expect = 5e-10
Identities = 28/67 (41%), Positives = 40/67 (59%)
Frame = +2
Query: 62 KVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDKTEWEQKAA 241
K K + PKR MSA+ W+ RE+IK PG+ V ++AK G W + DK+ WE+KAA
Sbjct: 21 KAKDPNAPKRAMSAFFFWMQENRERIKK--PGMGVADVAKAAGVEWGKLTDKSRWEKKAA 78
Query: 242 KAKEHMQ 262
K+ +
Sbjct: 79 DDKKRYE 85
>U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4
protein.
Length = 697
Score = 61.3 bits (142), Expect = 6e-10
Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Frame = +2
Query: 59 KKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMK--DKTEWEQ 232
KK K + PKR SAYM W ++R ++K + G V ++AKKGG WK+M DK +WE+
Sbjct: 548 KKDKDPNAPKRATSAYMQWFLASRNELKED--GDSVADVAKKGGAKWKTMSSDDKKKWEE 605
Query: 233 KAAKAKEHMQK 265
KA + K +K
Sbjct: 606 KAEEDKSRYEK 616
>AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3
protein.
Length = 689
Score = 58.4 bits (135), Expect = 4e-09
Identities = 29/66 (43%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Frame = +2
Query: 59 KKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMK--DKTEWEQ 232
KK K ++PKR +AY++W N+ R +K + G + ++AKK G WKSM DK EW
Sbjct: 553 KKTKDPNEPKRATTAYIIWFNANRNSMKED--GDTLGDVAKKAGAKWKSMSADDKKEWND 610
Query: 233 KAAKAK 250
KAA+ K
Sbjct: 611 KAAQDK 616
>U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 2, isoform a protein.
Length = 283
Score = 47.6 bits (108), Expect = 8e-06
Identities = 19/50 (38%), Positives = 33/50 (66%)
Frame = +2
Query: 68 KMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDK 217
K D+ KRPM+A+M+W R+++ ENP + +EI+K+ G WK + ++
Sbjct: 55 KNDDRVKRPMNAFMVWSRGQRKKMALENPKMHNSEISKRLGTEWKMLSEQ 104
>Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical
protein F40E10.2 protein.
Length = 212
Score = 45.2 bits (102), Expect = 4e-05
Identities = 17/47 (36%), Positives = 30/47 (63%)
Frame = +2
Query: 77 DKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDK 217
D KRPM+A+M+W R ++ +NP + +EI+K+ G WK + ++
Sbjct: 46 DHVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKQLSEQ 92
>U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying
defective protein 13,isoform d protein.
Length = 319
Score = 44.8 bits (101), Expect = 6e-05
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Frame = +2
Query: 56 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDKTE---W 226
R + K + KRPM+A+M+W R +I P + + I+K G WK M + + +
Sbjct: 169 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYY 228
Query: 227 EQKAAKAKEHMQK 265
E+++ +K HM++
Sbjct: 229 EEQSRLSKLHMEQ 241
>U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying
defective protein 13,isoform b protein.
Length = 316
Score = 44.8 bits (101), Expect = 6e-05
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Frame = +2
Query: 56 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDKTE---W 226
R + K + KRPM+A+M+W R +I P + + I+K G WK M + + +
Sbjct: 166 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYY 225
Query: 227 EQKAAKAKEHMQK 265
E+++ +K HM++
Sbjct: 226 EEQSRLSKLHMEQ 238
>U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying
defective protein 13,isoform c protein.
Length = 422
Score = 44.8 bits (101), Expect = 6e-05
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Frame = +2
Query: 56 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDKTE---W 226
R + K + KRPM+A+M+W R +I P + + I+K G WK M + + +
Sbjct: 272 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYY 331
Query: 227 EQKAAKAKEHMQK 265
E+++ +K HM++
Sbjct: 332 EEQSRLSKLHMEQ 344
>U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying
defective protein 13,isoform a protein.
Length = 470
Score = 44.8 bits (101), Expect = 6e-05
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Frame = +2
Query: 56 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDKTE---W 226
R + K + KRPM+A+M+W R +I P + + I+K G WK M + + +
Sbjct: 320 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYY 379
Query: 227 EQKAAKAKEHMQK 265
E+++ +K HM++
Sbjct: 380 EEQSRLSKLHMEQ 392
>AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain
protein COG-2 protein.
Length = 470
Score = 44.8 bits (101), Expect = 6e-05
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Frame = +2
Query: 56 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDKTE---W 226
R + K + KRPM+A+M+W R +I P + + I+K G WK M + + +
Sbjct: 320 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYY 379
Query: 227 EQKAAKAKEHMQK 265
E+++ +K HM++
Sbjct: 380 EEQSRLSKLHMEQ 392
>U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 1 protein.
Length = 404
Score = 43.6 bits (98), Expect = 1e-04
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Frame = +2
Query: 68 KMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKD--KTEWEQKAA 241
K ++ KRPM+A+M+W R +I P + EI+K+ G W+S+ D K + +A
Sbjct: 88 KSSNHIKRPMNAFMVWSQMERRKICEHQPDMHNAEISKQLGSRWRSLTDEEKAPFVAEAE 147
Query: 242 KAKE-HMQK 265
+ + HMQ+
Sbjct: 148 RLRVCHMQE 156
>U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2,
isoform b protein.
Length = 234
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/69 (31%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Frame = +2
Query: 56 RKKVKMTDK-PKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDKTE--W 226
RK+ K PKR +SA+ + R +I++ +P +V ++A++ G++WK + +T+ +
Sbjct: 124 RKRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMY 183
Query: 227 EQKAAKAKE 253
EQKA K+
Sbjct: 184 EQKAQADKD 192
Score = 31.5 bits (68), Expect = 0.56
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Frame = +2
Query: 98 SAYMLWLNSAREQIKSENPG--LRVTEIAKKGGEIWKSMKD--KTEWEQKAAKAKEHMQ 262
S Y ++ E+ K + P ++VTEI+KK E WK+M D K + + A K E Q
Sbjct: 49 SPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVDDEKRRFYELAQKDAERYQ 107
>U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2,
isoform c protein.
Length = 233
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/69 (31%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Frame = +2
Query: 56 RKKVKMTDK-PKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDKTE--W 226
RK+ K PKR +SA+ + R +I++ +P +V ++A++ G++WK + +T+ +
Sbjct: 123 RKRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMY 182
Query: 227 EQKAAKAKE 253
EQKA K+
Sbjct: 183 EQKAQADKD 191
Score = 31.5 bits (68), Expect = 0.56
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Frame = +2
Query: 98 SAYMLWLNSAREQIKSENPG--LRVTEIAKKGGEIWKSMKD--KTEWEQKAAKAKEHMQ 262
S Y ++ E+ K + P ++VTEI+KK E WK+M D K + + A K E Q
Sbjct: 50 SPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVDDEKRRFYELAQKDAERYQ 108
>U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2,
isoform a protein.
Length = 235
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/69 (31%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Frame = +2
Query: 56 RKKVKMTDK-PKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDKTE--W 226
RK+ K PKR +SA+ + R +I++ +P +V ++A++ G++WK + +T+ +
Sbjct: 125 RKRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMY 184
Query: 227 EQKAAKAKE 253
EQKA K+
Sbjct: 185 EQKAQADKD 193
Score = 31.5 bits (68), Expect = 0.56
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Frame = +2
Query: 98 SAYMLWLNSAREQIKSENPG--LRVTEIAKKGGEIWKSMKD--KTEWEQKAAKAKEHMQ 262
S Y ++ E+ K + P ++VTEI+KK E WK+M D K + + A K E Q
Sbjct: 50 SPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVDDEKRRFYELAQKDAERYQ 108
>AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility
group protein 1.2 protein.
Length = 235
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/69 (31%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Frame = +2
Query: 56 RKKVKMTDK-PKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDKTE--W 226
RK+ K PKR +SA+ + R +I++ +P +V ++A++ G++WK + +T+ +
Sbjct: 125 RKRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMY 184
Query: 227 EQKAAKAKE 253
EQKA K+
Sbjct: 185 EQKAQADKD 193
Score = 31.5 bits (68), Expect = 0.56
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Frame = +2
Query: 98 SAYMLWLNSAREQIKSENPG--LRVTEIAKKGGEIWKSMKD--KTEWEQKAAKAKEHMQ 262
S Y ++ E+ K + P ++VTEI+KK E WK+M D K + + A K E Q
Sbjct: 50 SPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVDDEKRRFYELAQKDAERYQ 108
>AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical
protein Y71H2AM.17 protein.
Length = 338
Score = 35.1 bits (77), Expect = 0.045
Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +2
Query: 83 PKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKD--KTEWEQKAAKAKEH 256
P+RP+ YM + ++++ENP ++ +I K G+ W + D K+ ++ + K
Sbjct: 26 PERPLQPYMRYSRKMWPKVRAENPEAQLWDIGKMIGKYWLDLPDGEKSHYQHEYELEKAD 85
Query: 257 MQK 265
+K
Sbjct: 86 YEK 88
>Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical protein
C26C6.1a protein.
Length = 1883
Score = 34.7 bits (76), Expect = 0.060
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +2
Query: 71 MTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKD--KTEWEQKA 238
MT K + S Y+L+ R++I ENP E++K G WK + + K +E +A
Sbjct: 1445 MTPKAVKSKSGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEEQKKHYEMRA 1502
>Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical
protein C26C6.1a protein.
Length = 1883
Score = 34.7 bits (76), Expect = 0.060
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +2
Query: 71 MTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKD--KTEWEQKA 238
MT K + S Y+L+ R++I ENP E++K G WK + + K +E +A
Sbjct: 1445 MTPKAVKSKSGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEEQKKHYEMRA 1502
>Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical
protein C26C6.1b protein.
Length = 513
Score = 34.7 bits (76), Expect = 0.060
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +2
Query: 71 MTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKD--KTEWEQKA 238
MT K + S Y+L+ R++I ENP E++K G WK + + K +E +A
Sbjct: 75 MTPKAVKSKSGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEEQKKHYEMRA 132
>Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical protein
T22H6.6a protein.
Length = 1405
Score = 32.3 bits (70), Expect = 0.32
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Frame = +2
Query: 56 RKKVKMTDKP-KRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM--KDKTEW 226
R KV + +RPM+A+M++ R + + P ++K GE W S+ K E+
Sbjct: 833 RSKVSANEPHVRRPMNAFMIFSKRHRPLVHQQYPNKDNRTVSKILGEWWYSLAADQKAEY 892
Query: 227 EQKAAKAKE 253
+ A + KE
Sbjct: 893 HKLATQVKE 901
>Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical
protein T22H6.6a protein.
Length = 1405
Score = 32.3 bits (70), Expect = 0.32
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Frame = +2
Query: 56 RKKVKMTDKP-KRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM--KDKTEW 226
R KV + +RPM+A+M++ R + + P ++K GE W S+ K E+
Sbjct: 833 RSKVSANEPHVRRPMNAFMIFSKRHRPLVHQQYPNKDNRTVSKILGEWWYSLAADQKAEY 892
Query: 227 EQKAAKAKE 253
+ A + KE
Sbjct: 893 HKLATQVKE 901
>Z50797-9|CAL36516.1| 640|Caenorhabditis elegans Hypothetical
protein T22H6.6b protein.
Length = 640
Score = 32.3 bits (70), Expect = 0.32
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Frame = +2
Query: 56 RKKVKMTDKP-KRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM--KDKTEW 226
R KV + +RPM+A+M++ R + + P ++K GE W S+ K E+
Sbjct: 68 RSKVSANEPHVRRPMNAFMIFSKRHRPLVHQQYPNKDNRTVSKILGEWWYSLAADQKAEY 127
Query: 227 EQKAAKAKE 253
+ A + KE
Sbjct: 128 HKLATQVKE 136
>AF043703-1|AAK21504.1| 437|Caenorhabditis elegans Posterior
pharynx defect protein 1 protein.
Length = 437
Score = 31.1 bits (67), Expect = 0.74
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Frame = +2
Query: 62 KVKMTDKPKRPMSAYMLWLNSAREQIKSE--NPGLRVTEIAKKGGEIWK--SMKDKTEWE 229
K K D K+P++A+M ++ R+ + E N + E+ K+ G+ W S +++ ++
Sbjct: 184 KAKKDDHVKKPLNAFMWFMKENRKALLEEIGNNEKQSAELNKELGKRWHDLSKEEQAKYF 243
Query: 230 QKAAKAKE 253
+ A K KE
Sbjct: 244 EMAKKDKE 251
>Z81118-10|CAB61029.1| 657|Caenorhabditis elegans Hypothetical
protein R11G10.1a protein.
Length = 657
Score = 30.7 bits (66), Expect = 0.98
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 128 REQIKSENPGLRVTEIAKKGGEIWKSMKDKTEWEQKAAKA 247
RE + E + V ++ +WK +K KTEW K+ +A
Sbjct: 586 REVAEQEREVMTVRMNRRQTNSVWKWIKTKTEWNDKSKRA 625
>Z81118-1|CAB03329.1| 478|Caenorhabditis elegans Hypothetical
protein R11G10.1b protein.
Length = 478
Score = 30.7 bits (66), Expect = 0.98
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 128 REQIKSENPGLRVTEIAKKGGEIWKSMKDKTEWEQKAAKA 247
RE + E + V ++ +WK +K KTEW K+ +A
Sbjct: 407 REVAEQEREVMTVRMNRRQTNSVWKWIKTKTEWNDKSKRA 446
>Z77668-2|CAB61021.1| 657|Caenorhabditis elegans Hypothetical
protein R11G10.1a protein.
Length = 657
Score = 30.7 bits (66), Expect = 0.98
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 128 REQIKSENPGLRVTEIAKKGGEIWKSMKDKTEWEQKAAKA 247
RE + E + V ++ +WK +K KTEW K+ +A
Sbjct: 586 REVAEQEREVMTVRMNRRQTNSVWKWIKTKTEWNDKSKRA 625
>AJ000538-1|CAA04171.1| 657|Caenorhabditis elegans GluClalpha2A
protein protein.
Length = 657
Score = 30.7 bits (66), Expect = 0.98
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 128 REQIKSENPGLRVTEIAKKGGEIWKSMKDKTEWEQKAAKA 247
RE + E + V ++ +WK +K KTEW K+ +A
Sbjct: 586 REVAEQEREVMTVRMNRRQTNSVWKWIKTKTEWNDKSKRA 625
>AJ000537-1|CAA04170.1| 478|Caenorhabditis elegans GluClalpha2B
protein protein.
Length = 478
Score = 30.7 bits (66), Expect = 0.98
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 128 REQIKSENPGLRVTEIAKKGGEIWKSMKDKTEWEQKAAKA 247
RE + E + V ++ +WK +K KTEW K+ +A
Sbjct: 407 REVAEQEREVMTVRMNRRQTNSVWKWIKTKTEWNDKSKRA 446
>AC006769-1|AAF60590.2| 287|Caenorhabditis elegans Hypothetical
protein Y45G12C.8 protein.
Length = 287
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -2
Query: 183 FLAISVTLKPGFSDFICSLALFNHSMYADIGRFGLSVILTFFL 55
FLA+ + FS F C A N SM +FGL I+ FF+
Sbjct: 17 FLALYLNSFILFSIFYCKRAHVNRSMILIYFKFGLDAIIMFFM 59
>AC006722-17|ABP57812.1| 141|Caenorhabditis elegans Hypothetical
protein Y19D10A.17 protein.
Length = 141
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -2
Query: 183 FLAISVTLKPGFSDFICSLALFNHSMYADIGRFGLSVILTFFL 55
FLA+ + FS F C A N SM +FGL I+ FF+
Sbjct: 17 FLALYLNSFILFSIFYCKRAHVNRSMILIYFKFGLDAIIMFFM 59
>AF098989-2|AAK18954.3| 346|Caenorhabditis elegans Hypothetical
protein F47G6.3 protein.
Length = 346
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/57 (24%), Positives = 28/57 (49%)
Frame = +3
Query: 177 PKKAVKFGNQ*KTKLNGNRKLPRPRSICKRPRILQCQWRWWRRGRKEGSKTREKGQE 347
PK+ + Q +L+ P+P+S + + R + G+K G+K +E+ +E
Sbjct: 8 PKELKEDSTQQSDELSQKEPRPKPKSKVQTAERIPSSKRRSKSGKKRGTKEKERSKE 64
>AL117202-21|CAB55087.1| 370|Caenorhabditis elegans Hypothetical
protein Y47D3A.27 protein.
Length = 370
Score = 27.5 bits (58), Expect = 9.1
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 8/68 (11%)
Frame = +2
Query: 155 GLRVTEIAKKGGEIWKSMKDKTEWEQKA--------AKAKEHMQKT*NLTMPMAVVAKGA 310
G+ + + KK G+ W+ +DK E + A+ KE ++ NL P VAK
Sbjct: 128 GIDWSLVKKKAGDQWEGDEDKKSLEDEEPEPITMSDARKKEIFEQLVNLLKPNQTVAKAL 187
Query: 311 KRRLKNEG 334
K +G
Sbjct: 188 SELKKKKG 195
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,520,217
Number of Sequences: 27780
Number of extensions: 201221
Number of successful extensions: 639
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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