Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0266
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc...    31   0.10 
SPAC22H10.02 |||conserved fungal protein|Schizosaccharomyces pom...    26   5.0  

>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 488

 Score = 31.5 bits (68), Expect = 0.10
 Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
 Frame = +1

Query: 127 DSLAAAQLEMAGNPNSIALRRPFDPVAHDLEASFR-LTRFADLKEEVAKYLKMFSENLXS 303
           DS+A  Q E+  N      ++      + L+A+ R ++R    ++E  + L  FS+N+ +
Sbjct: 81  DSVALEQFELRRNLTET--KQELSTALYSLDAALRVISRLTKERDEAREALAKFSDNIGT 138

Query: 304 LYSKTI 321
           + SKTI
Sbjct: 139 VSSKTI 144


>SPAC22H10.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 158

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +1

Query: 190 PFDPVAHDLEASFRLTRFADLKEEVAKYLKMFSENLXSLYSKT 318
           P+    +D  ASF   R  D+++++     +  E L S+Y  T
Sbjct: 35  PYGYQLNDFRASFEKARTFDMEDDLEFCPSLSDEELVSIYQST 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,401,725
Number of Sequences: 5004
Number of extensions: 45480
Number of successful extensions: 79
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)