Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0266
         (616 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0164 - 6066744-6067637                                           28   6.8  
05_05_0007 - 21465506-21466273                                         27   8.9  

>03_02_0164 - 6066744-6067637
          Length = 297

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +2

Query: 353 GYPAHRHRLGLLGDT 397
           GYP H HR GL G T
Sbjct: 160 GYPQHHHRFGLAGPT 174


>05_05_0007 - 21465506-21466273
          Length = 255

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +2

Query: 455 DDPYMMGKIACANVLATYRHGCYGVXNMLM*WGLNQNAERTRRVIL 592
           +DPY   + + A +LA +  G +G    ++ W L  N + T   I+
Sbjct: 162 EDPYEDFRASMAEMLAAHGVGDWGWLEAMLGWYLRANGKETHAAIV 207


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,351,292
Number of Sequences: 37544
Number of extensions: 326529
Number of successful extensions: 649
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)