Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0266
         (616 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45399| Best HMM Match : No HMM Matches (HMM E-Value=.)              51   9e-07
SB_51382| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_16900| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_15412| Best HMM Match : zf-CCHC (HMM E-Value=0.22)                  28   5.2  
SB_58178| Best HMM Match : UBACT (HMM E-Value=1.7e-34)                 28   6.9  

>SB_45399| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 573

 Score = 50.8 bits (116), Expect = 9e-07
 Identities = 28/53 (52%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
 Frame = +2

Query: 437 FXYPLVDDPYMMGKIACANVLA-TYRHGCYGVXNMLM*WGL-NQNAERTRRVI 589
           F YPLV+DPY+ GKIACANVL+  Y  G     NMLM  G+ NQ   + R V+
Sbjct: 335 FFYPLVNDPYVQGKIACANVLSDLYAMGVTECDNMLMLLGVSNQMTLKEREVV 387



 Score = 36.7 bits (81), Expect = 0.015
 Identities = 17/26 (65%), Positives = 18/26 (69%)
 Frame = +3

Query: 366 IGIGLDCSVTPLRHGGLXLVQTTAXF 443
           IGIGLD  V P RH G+ LVQTT  F
Sbjct: 311 IGIGLDSCVLPTRHKGISLVQTTDFF 336


>SB_51382| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 216

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 19/37 (51%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
 Frame = -2

Query: 285 EHLEVLCNFFL*ISK---SCQPKTCLQ--IVRHRVKR 190
           +HL VLCNFFL I+K    C+ K   Q  IV  R KR
Sbjct: 96  QHLYVLCNFFLKINKLLIKCENKVKRQQLIVEVRGKR 132


>SB_16900| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 451

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 266 ATSSFRSANRVSRKLASKSCATGSNGRRKAIELGL 162
           A S   S N + R LA+++C  G N   K  + GL
Sbjct: 326 AMSYLESMNFIHRDLAARNCLVGDNNLVKVADFGL 360


>SB_15412| Best HMM Match : zf-CCHC (HMM E-Value=0.22)
          Length = 542

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +1

Query: 82  SLFWC-NMSYQTSVAQDSLAAAQLEMAGNPNSIALRRPFDP 201
           S FWC    Y+T   +D LAA  + +  N   I  + P  P
Sbjct: 245 SKFWCPGCEYETEDVKDELAAVLISVHSNGTHITNQTPSTP 285


>SB_58178| Best HMM Match : UBACT (HMM E-Value=1.7e-34)
          Length = 1236

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 536 YXALRNTHGDRSLRHWHMQSYPSYMGHPL 450
           Y  LR       L  W+ +SYP Y+G PL
Sbjct: 645 YRTLRRIVPGEELLVWYDKSYPQYLGIPL 673


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,641,374
Number of Sequences: 59808
Number of extensions: 357727
Number of successful extensions: 738
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)