Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0266
         (616 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021488-2|CAA16367.2|  378|Caenorhabditis elegans Hypothetical ...    48   7e-06
AF016679-4|AAB66158.1|  430|Caenorhabditis elegans Hypothetical ...    31   0.86 

>AL021488-2|CAA16367.2|  378|Caenorhabditis elegans Hypothetical
           protein Y45F10A.4 protein.
          Length = 378

 Score = 47.6 bits (108), Expect = 7e-06
 Identities = 21/37 (56%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
 Frame = +2

Query: 437 FXYPLVDDPYMMGKIACANVLA-TYRHGCYGVXNMLM 544
           F YPL+DDPY+MG++ CANVL+  Y  G     NMLM
Sbjct: 84  FFYPLIDDPYIMGRVTCANVLSDLYAMGVSECDNMLM 120



 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 28/64 (43%), Positives = 37/64 (57%)
 Frame = +3

Query: 252 KGRSCKVPQDVLGKLXESLQQDYSQADQDQFMHVAIPRIGIGLDCSVTPLRHGGLXLVQT 431
           KG  CKVP++VL +L ++ + D    + D+        + IGLD  V PLRH GL LVQT
Sbjct: 31  KGCGCKVPRNVLLQLLQTFKTDLV-INNDE--------VDIGLDSCVIPLRHPGLRLVQT 81

Query: 432 TAXF 443
           T  F
Sbjct: 82  TDFF 85


>AF016679-4|AAB66158.1|  430|Caenorhabditis elegans Hypothetical
           protein T28C12.3 protein.
          Length = 430

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 572 FQHFG*APIT*AYXALRNTHGDRSLRHWHMQSYPSYMG 459
           FQH    P+  AY A+  T+GD  + + H + +  YMG
Sbjct: 64  FQHLQGVPVFNAYKAMNKTYGDNFMEYRHFEYW--YMG 99


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,500,565
Number of Sequences: 27780
Number of extensions: 262685
Number of successful extensions: 590
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)