Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0266
         (616 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    26   0.34 
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    26   0.34 
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    26   0.34 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.1  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   7.2  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   7.2  
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            21   9.6  

>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 217 EASFRLTRFADLKEEVAKYLKMFSEN 294
           E  +  TRF ++K+EV+ Y+K    N
Sbjct: 86  EPPYSETRFEEIKKEVSSYIKKIGYN 111


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 217 EASFRLTRFADLKEEVAKYLKMFSEN 294
           E  +  TRF ++K+EV+ Y+K    N
Sbjct: 102 EPPYSETRFEEIKKEVSSYIKKIGYN 127


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 217 EASFRLTRFADLKEEVAKYLKMFSEN 294
           E  +  TRF ++K+EV+ Y+K    N
Sbjct: 159 EPPYSETRFEEIKKEVSSYIKKIGYN 184


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 481 CMCQCLSDLSPWVLRSA 531
           C C+ L +LS WV  +A
Sbjct: 928 CRCKFLQELSSWVSDNA 944


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = -3

Query: 104 DILHQNNDIYVFR 66
           D+L  NND+Y+++
Sbjct: 369 DVLLSNNDVYLYQ 381


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = -3

Query: 104 DILHQNNDIYVFR 66
           D+L  NND+Y+++
Sbjct: 407 DVLLSNNDVYLYQ 419


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 378 LDCSVTPLRHGG 413
           LDCS+ P  H G
Sbjct: 25  LDCSIKPKDHNG 36


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,491
Number of Sequences: 438
Number of extensions: 3017
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)