Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0261
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.08c |alr1||alanine racemase Alr1|Schizosaccharomyces pom...    27   2.3  

>SPCC965.08c |alr1||alanine racemase Alr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 375

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 22/65 (33%), Positives = 32/65 (49%)
 Frame = -3

Query: 617 WLRSGVLLHGPINY*TPXRSPDTPRXAQCVXVSIHPAXAI*RPVSNFXSA*SPKHFRCIG 438
           WLR+G++L+G   + +  +   TP       V+I PA  +   VS   S    KH    G
Sbjct: 217 WLRAGIMLYGISPFLSKNKDSKTPE-----SVNIKPAMKL---VSTIISV---KHVD-KG 264

Query: 437 QPVGY 423
           QP+GY
Sbjct: 265 QPIGY 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,037,512
Number of Sequences: 5004
Number of extensions: 32601
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)