Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0258
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.10c |||metallochaperone |Schizosaccharomyces pombe|chr ...    31   0.13 
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    28   1.2  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    25   8.3  

>SPBC1709.10c |||metallochaperone |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 68

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 20/47 (42%), Positives = 29/47 (61%)
 Frame = +3

Query: 339 AVERVLNRLKGQGVXDISISLPXQKVSXKSTLSADDLLEIIKKTGKK 479
           A++RVL RL   GV D SIS+  Q+V   +    + + + IKKTGK+
Sbjct: 17  AIDRVLTRL---GVEDKSISVEKQEVIVTTDKPYELVEQTIKKTGKE 60


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
           Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/55 (23%), Positives = 28/55 (50%)
 Frame = +3

Query: 348 RVLNRLKGQGVXDISISLPXQKVSXKSTLSADDLLEIIKKTGKKTTYVGAQXNYW 512
           ++LN L  Q +  +++ +   + + KST S   +L  +KK G ++     + + W
Sbjct: 559 QILNELSTQSLYKLTLRVSHLQFTRKSTGSLSSVLIFVKKIGCQSELFNCENSDW 613


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +1

Query: 193 DKILKXSITY*VFVKAVVFIIHIVYV--YSYSKMTTTHIFNVEMTCEGCLAPSNEFS 357
           D +++ S+     +   V I+   Y+  YSYSK+  + IFN+  +    LA  N F+
Sbjct: 226 DSMIRYSVIPKASLYDTVLILCSTYISTYSYSKLAQSVIFNLISSPVSNLAFENVFN 282


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,632,229
Number of Sequences: 5004
Number of extensions: 47001
Number of successful extensions: 93
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)