Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0258
         (724 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0696 + 6152849-6152857,6153676-6153751,6154644-6154804           47   2e-05
02_04_0077 - 19491844-19492154,19492456-19492531,19492841-19492852     44   9e-05
07_03_1643 + 28329090-28329125,28329260-28329335,28329413-28330305     30   2.1  
01_06_0769 - 31833788-31834182,31834277-31834352,31834458-31834463     30   2.1  
07_03_0478 + 18556773-18556883,18557219-18557318,18557807-185595...    29   3.7  
02_05_0764 + 31589040-31589309,31589322-31589529,31589892-31590193     29   3.7  

>08_01_0696 + 6152849-6152857,6153676-6153751,6154644-6154804
          Length = 81

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 22/55 (40%), Positives = 36/55 (65%)
 Frame = +3

Query: 336 GAVERVLNRLKGQGVXDISISLPXQKVSXKSTLSADDLLEIIKKTGKKTTYVGAQ 500
           GAV+RVL ++  QGV    + +  QKV+ K  ++ D +L+ + KTGKKT++  A+
Sbjct: 18  GAVKRVLGKM--QGVESFDVDIKEQKVTVKGNVTPDAVLQTVSKTGKKTSFWDAE 70


>02_04_0077 - 19491844-19492154,19492456-19492531,19492841-19492852
          Length = 132

 Score = 44.4 bits (100), Expect = 9e-05
 Identities = 20/52 (38%), Positives = 33/52 (63%)
 Frame = +3

Query: 333 SGAVERVLNRLKGQGVXDISISLPXQKVSXKSTLSADDLLEIIKKTGKKTTY 488
           +GAV RVL ++  +GV    I +  QKV+ K  +  +D+ + + KTGKKT++
Sbjct: 18  AGAVRRVLTKM--EGVETFDIDMEQQKVTVKGNVKPEDVFQTVSKTGKKTSF 67


>07_03_1643 + 28329090-28329125,28329260-28329335,28329413-28330305
          Length = 334

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = +3

Query: 342 VERVLNRLKGQGVXDISISLPXQKVSXKSTLSADDLLEIIKKTGKKTT 485
           V++VL  +  +GV  ++I     KV+  S++ AD L+  + K+GK  T
Sbjct: 29  VKKVLQNI--EGVYKVTIDAAQHKVTVTSSVGADVLVRRLHKSGKHAT 74


>01_06_0769 - 31833788-31834182,31834277-31834352,31834458-31834463
          Length = 158

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 11/46 (23%), Positives = 27/46 (58%)
 Frame = +3

Query: 342 VERVLNRLKGQGVXDISISLPXQKVSXKSTLSADDLLEIIKKTGKK 479
           + + + R+  +GV D+ I +  QKV+    +    +L+ +++TG++
Sbjct: 19  IRKAIQRM--EGVDDVEIDMERQKVTVNGNVEQKKVLKAVRRTGRR 62


>07_03_0478 +
           18556773-18556883,18557219-18557318,18557807-18559513,
           18559709-18560094,18560175-18560246,18560366-18560455
          Length = 821

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -2

Query: 315 FYVEYVCRSHFTVTVHVYYMNNEYDGF 235
           FYV Y CRS F +T      NN +DGF
Sbjct: 134 FYVSYGCRSGFGITRR---SNNTFDGF 157


>02_05_0764 + 31589040-31589309,31589322-31589529,31589892-31590193
          Length = 259

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 20/71 (28%), Positives = 33/71 (46%)
 Frame = +3

Query: 267 RVQLQ*NDYDTHIQRRNDL*RLSGAVERVLNRLKGQGVXDISISLPXQKVSXKSTLSADD 446
           R Q Q       ++ R D  R    V R L  ++G  V  + +S   QKV+   ++   +
Sbjct: 126 RQQQQQLQITVELRVRMDCERCERQVRRALAGMRG--VQHVEVSRRQQKVTVTGSVDPHE 183

Query: 447 LLEIIKKTGKK 479
           +L  ++ TGKK
Sbjct: 184 VLRRVQSTGKK 194


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,279,223
Number of Sequences: 37544
Number of extensions: 304143
Number of successful extensions: 693
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)