Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0258
         (724 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061200-1|AAL28748.1|   71|Drosophila melanogaster LD15555p pro...    55   9e-08
AE014296-3595|AAN12185.1|   71|Drosophila melanogaster CG32446-P...    55   9e-08
X85998-1|CAA59990.1|  110|Drosophila melanogaster elastin like p...    39   0.006

>AY061200-1|AAL28748.1|   71|Drosophila melanogaster LD15555p
           protein.
          Length = 71

 Score = 55.2 bits (127), Expect = 9e-08
 Identities = 28/56 (50%), Positives = 40/56 (71%)
 Frame = +3

Query: 333 SGAVERVLNRLKGQGVXDISISLPXQKVSXKSTLSADDLLEIIKKTGKKTTYVGAQ 500
           + AVERVL +L G  V  ++I+L  + VS  S LS+D+L+E ++KTGK TTYVG +
Sbjct: 16  ASAVERVLGKL-GDKVEKVNINLEDRTVSVTSNLSSDELMEQLRKTGKSTTYVGVK 70


>AE014296-3595|AAN12185.1|   71|Drosophila melanogaster CG32446-PA
           protein.
          Length = 71

 Score = 55.2 bits (127), Expect = 9e-08
 Identities = 28/56 (50%), Positives = 40/56 (71%)
 Frame = +3

Query: 333 SGAVERVLNRLKGQGVXDISISLPXQKVSXKSTLSADDLLEIIKKTGKKTTYVGAQ 500
           + AVERVL +L G  V  ++I+L  + VS  S LS+D+L+E ++KTGK TTYVG +
Sbjct: 16  ASAVERVLGKL-GDKVEKVNINLEDRTVSVTSNLSSDELMEQLRKTGKSTTYVGVK 70


>X85998-1|CAA59990.1|  110|Drosophila melanogaster elastin like
          protein protein.
          Length = 110

 Score = 39.1 bits (87), Expect = 0.006
 Identities = 17/17 (100%), Positives = 17/17 (100%)
 Frame = +1

Query: 13 VAAALELVDPPGCRNSA 63
          VAAALELVDPPGCRNSA
Sbjct: 6  VAAALELVDPPGCRNSA 22


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,933,491
Number of Sequences: 53049
Number of extensions: 522314
Number of successful extensions: 1244
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1244
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3231892257
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)