Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0258
         (724 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14429-10|AAL00882.1|   69|Caenorhabditis elegans Cu (copper) ch...    34   0.12 
AB017201-1|BAA37144.1|   69|Caenorhabditis elegans copper chaper...    34   0.12 

>L14429-10|AAL00882.1|   69|Caenorhabditis elegans Cu (copper)
           chaperonin protein 1 protein.
          Length = 69

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 16/49 (32%), Positives = 29/49 (59%)
 Frame = +3

Query: 333 SGAVERVLNRLKGQGVXDISISLPXQKVSXKSTLSADDLLEIIKKTGKK 479
           + A  +VL +L    +    I++  +K++  + L A D+LE +KKTGK+
Sbjct: 16  ANAARKVLGKLGEDKIKIDDINVETKKITVTTDLPASDVLEALKKTGKE 64


>AB017201-1|BAA37144.1|   69|Caenorhabditis elegans copper chaperone
           protein.
          Length = 69

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 16/49 (32%), Positives = 29/49 (59%)
 Frame = +3

Query: 333 SGAVERVLNRLKGQGVXDISISLPXQKVSXKSTLSADDLLEIIKKTGKK 479
           + A  +VL +L    +    I++  +K++  + L A D+LE +KKTGK+
Sbjct: 16  ANAARKVLGKLGEDKIKIDDINVETKKITVTTDLPASDVLEALKKTGKE 64


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,730,744
Number of Sequences: 27780
Number of extensions: 268573
Number of successful extensions: 574
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)