Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0258
         (724 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    25   0.96 
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    25   0.96 
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          23   3.9  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   3.9  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   3.9  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   6.7  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   6.7  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 24.6 bits (51), Expect = 0.96
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 527 WYQXPPVILLSXNICGFLASFLNY 456
           WYQ PP+  +   I GF+   L +
Sbjct: 41  WYQYPPLNPMWHGILGFVIGMLGF 64


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 24.6 bits (51), Expect = 0.96
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 527 WYQXPPVILLSXNICGFLASFLNY 456
           WYQ PP+  +   I GF+   L +
Sbjct: 7   WYQYPPLNPMWHGILGFVIGMLGF 30


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = +2

Query: 560 IMXKQCNNDSLIYKLTYIXSKWIIY 634
           ++ K+  ND  + +L     KW++Y
Sbjct: 14  LLKKRSENDPFLKRLITGDEKWVVY 38


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = +2

Query: 470 WQENHICWXSXEL-LVXFDTTKFAAFWMLKIIM 565
           W+++H+ W S E   +     K    W+  I+M
Sbjct: 90  WEQSHLTWKSSEFDSINSIRVKSYEIWVPDIVM 122


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -3

Query: 59  EFLQPGGSTSSRAA 18
           EFL PGGS   R A
Sbjct: 69  EFLNPGGSVKDRIA 82


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
            receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 11/43 (25%), Positives = 19/43 (44%)
 Frame = -1

Query: 130  LADVYSNTLSTESXTDKXLITXMPNSCSPGDPLVLERPPPGGD 2
            L D  + +L+ ++     +    P    PGD  + +RP P  D
Sbjct: 893  LNDPTTVSLAVDTVARSNVTPRSPGRAWPGDSDIRQRPIPRSD 935


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = +2

Query: 560 IMXKQCNNDSLIYKLTYIXSKWIIY 634
           ++ K+  ND  + +L     KW++Y
Sbjct: 135 LLKKRNENDPFLKRLITGDEKWVVY 159


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,077
Number of Sequences: 438
Number of extensions: 3786
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)