Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0258
         (724 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g66240.1 68414.m07519 copper homeostasis factor, putative / c...    44   1e-04
At3g56240.1 68416.m06250 copper homeostasis factor / copper chap...    43   2e-04
At1g64810.1 68414.m07348 expressed protein contains Pfam PF05634...    30   1.8  
At4g39700.1 68417.m05618 heavy-metal-associated domain-containin...    29   2.4  
At4g02110.1 68417.m00282 BRCT domain-containing protein contains...    28   5.5  
At1g06330.1 68414.m00669 copper-binding family protein similar t...    28   5.5  

>At1g66240.1 68414.m07519 copper homeostasis factor, putative /
           copper chaperone, putative (CCH) similar to gi:3168840
           contains Pfam profile PF00403: Heavy-metal-associated
           domain
          Length = 106

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 21/55 (38%), Positives = 34/55 (61%)
 Frame = +3

Query: 336 GAVERVLNRLKGQGVXDISISLPXQKVSXKSTLSADDLLEIIKKTGKKTTYVGAQ 500
           GAV+RVL ++  +GV    + +  QKV+ K  +  D +L+ + KTGKKT +  A+
Sbjct: 48  GAVKRVLGKM--EGVESFDVDIKEQKVTVKGNVQPDAVLQTVTKTGKKTAFWEAE 100


>At3g56240.1 68416.m06250 copper homeostasis factor / copper
           chaperone (CCH) (ATX1) identical to gi:3168840 Pfam
           profile PF00403: Heavy-metal-associated domain
          Length = 121

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 20/51 (39%), Positives = 31/51 (60%)
 Frame = +3

Query: 336 GAVERVLNRLKGQGVXDISISLPXQKVSXKSTLSADDLLEIIKKTGKKTTY 488
           GAV RVL ++  +GV    I +  QKV+ K  +  + + + + KTGKKT+Y
Sbjct: 18  GAVNRVLGKM--EGVESFDIDIKEQKVTVKGNVEPEAVFQTVSKTGKKTSY 66


>At1g64810.1 68414.m07348 expressed protein contains Pfam PF05634:
           Arabidopsis thaliana protein of unknown function
           (DUF794)
          Length = 436

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +1

Query: 226 VFVKAVVFIIHIVYVYSYSKMTTTHIFNVEMTCEGCLAPSN 348
           + +K +  ++H+V V++ S+    H+ NV      C  P+N
Sbjct: 139 LLIKGLAQLLHVVPVFACSECGAVHVANVGHNIRDCNGPTN 179


>At4g39700.1 68417.m05618 heavy-metal-associated domain-containing
           protein / copper chaperone (CCH)-related low similarity
           to copper homeostasis factor [GI:3168840][PMID:9701579];
           similar to farnesylated proteins GMFP7 [Glycine
           max][GI:4097573] and ATFP7 [GI:4097555]; contains
           heavy-metal-associated domain PF00403
          Length = 158

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
 Frame = +3

Query: 336 GAVERVLNRLKG-QGVXDISISLPXQKVSXKSTLSADDLLEIIKKTGKKTTYVGAQXNYW 512
           G V ++ N L   +GV  + I+   QKV+      A  +L+  K TGKK           
Sbjct: 44  GCVLKIKNSLSSLKGVKTVEINKKQQKVTVSGYADASKVLKKAKATGKKAEI-------- 95

Query: 513 WXLIPQNL 536
           W  +P NL
Sbjct: 96  WPYVPYNL 103


>At4g02110.1 68417.m00282 BRCT domain-containing protein contains Pfam
            domain, PF00533: BRCA1 C Terminus (BRCT) domain
          Length = 1293

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -2

Query: 354  ELVRRRQTTFTGHFYVEYVCRSHFTVTVHVYYMNNEY 244
            E +R         + VEYVC+  + +  HV Y  N +
Sbjct: 1239 EFIRHEIPCVLSDYLVEYVCKPGYALDKHVLYNTNSW 1275


>At1g06330.1 68414.m00669 copper-binding family protein similar to
           copper homeostasis factor gi:3168840 from Arabidopsis
           thaliana; contains Pfam heavy-metal-associated domain
           PF00403
          Length = 159

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +3

Query: 336 GAVERVLNRL-KGQGVXDISISLPXQKVSXKSTLSADDLLEIIKKTGKK 479
           G   RV N L K +GV  + I +  QKV+         +L+ ++KTG++
Sbjct: 23  GCESRVKNALQKMRGVDAVEIDMVQQKVTVTGYADQKKVLKKVRKTGRR 71


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,633,378
Number of Sequences: 28952
Number of extensions: 240643
Number of successful extensions: 417
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)