Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0253
         (663 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22175-2|CAA80131.2|  520|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z11115-20|CAA77460.2|  520|Caenorhabditis elegans Hypothetical p...    30   1.3  
Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical pr...    27   9.0  
Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical pr...    27   9.0  

>Z22175-2|CAA80131.2|  520|Caenorhabditis elegans Hypothetical
           protein ZK637.1 protein.
          Length = 520

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 292 FSFFNVITFLN*MMLKRHTHTDKYFICTVFIQGSFSC 182
           ++ F + TFL    L R T T   F+   FI G+F C
Sbjct: 406 YAVFAIFTFLLYFCLDRFTVTVLIFVARAFISGAFQC 442


>Z11115-20|CAA77460.2|  520|Caenorhabditis elegans Hypothetical
           protein ZK637.1 protein.
          Length = 520

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 292 FSFFNVITFLN*MMLKRHTHTDKYFICTVFIQGSFSC 182
           ++ F + TFL    L R T T   F+   FI G+F C
Sbjct: 406 YAVFAIFTFLLYFCLDRFTVTVLIFVARAFISGAFQC 442


>Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical
           protein C46C2.1b protein.
          Length = 1677

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +2

Query: 194 PLNEHSTYEILISVCVSF*HHSI*ERNHIKKREKKTSLPNFSSPKNIATRE 346
           P+N  +T   ++   VS   HSI +R+ + K    TSL + SSP + A  +
Sbjct: 203 PINVAAT---VLQNAVSSPQHSIFDRSRLNKIPPNTSLASSSSPSDAANND 250


>Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical
           protein C46C2.1a protein.
          Length = 1838

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +2

Query: 194 PLNEHSTYEILISVCVSF*HHSI*ERNHIKKREKKTSLPNFSSPKNIATRE 346
           P+N  +T   ++   VS   HSI +R+ + K    TSL + SSP + A  +
Sbjct: 203 PINVAAT---VLQNAVSSPQHSIFDRSRLNKIPPNTSLASSSSPSDAANND 250


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,578,995
Number of Sequences: 27780
Number of extensions: 226480
Number of successful extensions: 536
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)