Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0251
(666 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC8D2.15 |||mitochondrial lipoic acid synthetase |Schizosaccha... 105 4e-24
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ... 27 3.2
SPCC1672.12c |||DUF410 family protein|Schizosaccharomyces pombe|... 27 3.2
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 26 5.6
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 7.4
SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating ... 25 7.4
SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|ch... 25 9.8
SPAC56F8.11 |spc3||signal peptidase subunit Spc3 |Schizosaccharo... 25 9.8
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce... 25 9.8
SPCC584.14 |mug160||conserved eukaryotic protein|Schizosaccharom... 25 9.8
>SPBC8D2.15 |||mitochondrial lipoic acid synthetase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 370
Score = 105 bits (253), Expect = 4e-24
Identities = 55/79 (69%), Positives = 59/79 (74%)
Frame = +2
Query: 17 ILVECLVPDFRAVRGCVARVASSGLDVFAHNVETVERLTPFVRDPRAGYRQTLKVLQMAK 196
ILVE L PDF V VA SGLDVFAHNVETVE LTPFVRD RA YRQ+L VL+ K
Sbjct: 201 ILVEALTPDFSGRMDLVEIVAKSGLDVFAHNVETVEELTPFVRDRRATYRQSLSVLKHVK 260
Query: 197 EINPDLITKSSIMLGLGET 253
+ P LITK+SIMLGLGET
Sbjct: 261 KTCPHLITKTSIMLGLGET 279
Score = 55.6 bits (128), Expect = 6e-09
Identities = 25/39 (64%), Positives = 30/39 (76%)
Frame = +1
Query: 256 AQVEQTMKDLREAGVDCVTLGQYMQPTKKHLKVFEYVTP 372
A++ T+KDL E VD VT GQYM+PTK+HLKV EYV P
Sbjct: 281 AEILTTLKDLLEHNVDVVTFGQYMRPTKRHLKVQEYVHP 319
>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/59 (20%), Positives = 28/59 (47%)
Frame = -1
Query: 222 FVIKSGFISLAICKTFNVWRYPALGSRTKGVSLSTVSTLCANTSRPLEATRATQPRTAR 46
+ + G ++ IC FN+ + P++ S + + V +N+ PL+ + + A+
Sbjct: 444 WTVHQGPLTATICHAFNLEKAPSMHSLAEAQMIPDVPISHSNSMEPLDTVSSLKLEIAK 502
>SPCC1672.12c |||DUF410 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 303
Score = 26.6 bits (56), Expect = 3.2
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +1
Query: 346 LKVFEYVTPAGSAVGGARPQLGFCTWPAEPGALVLQGRRVLHQRRAAGQEGN 501
L V+E + A S AR +PAE GA +R+L ++AG +G+
Sbjct: 67 LDVYEKASYAASLDNKARALTLLGLFPAEEGARKQYVKRLLEWSKSAGPQGD 118
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 25.8 bits (54), Expect = 5.6
Identities = 8/18 (44%), Positives = 15/18 (83%)
Frame = +2
Query: 95 VFAHNVETVERLTPFVRD 148
VFA+ +E ++R+TPF+ +
Sbjct: 394 VFANGIEDIKRITPFLNE 411
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 322 TGPALRSPLPPRVDLSWSAPLARG 251
+ PA+ SP PP+V ++ P A G
Sbjct: 919 SAPAIASPPPPKVGETYHPPTASG 942
>SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating
kinase Crk1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 335
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 366 HVLEHLEVLLRGLHVLAQRYAVHSRL 289
H+ + +LLRGLH + R+ +H L
Sbjct: 109 HIKSWMVMLLRGLHHIHSRFILHRDL 134
>SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 25.0 bits (52), Expect = 9.8
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = +3
Query: 222 SRPSCWDSARPRASGADHERSTRGGSGLRNAGPVHAAHEEAPQGV 356
S P C S + A H R+ LR + P+ AH PQ V
Sbjct: 109 SVPECDRSFTRSDALAKHMRTVHEADTLRPSDPIPKAHPMHPQNV 153
>SPAC56F8.11 |spc3||signal peptidase subunit Spc3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 185
Score = 25.0 bits (52), Expect = 9.8
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = +1
Query: 400 PQLGFCTWPAEPGALVLQGRRVLHQ 474
P++GF +W A PG+ + +++ Q
Sbjct: 159 PKMGFLSWGAGPGSYEIPFHKIITQ 183
>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 25.0 bits (52), Expect = 9.8
Identities = 16/65 (24%), Positives = 24/65 (36%)
Frame = +1
Query: 187 NGQRNKS*FNNEVVHHAGTRRDRAQVEQTMKDLREAGVDCVTLGQYMQPTKKHLKVFEYV 366
N R NN +H T+R E + D +C + P ++L EY
Sbjct: 121 NQSRKNQMSNNSTTYHRETKRRNINAEASTSD------NCNNSNTSVDPMDEYLVTAEYT 174
Query: 367 TPAGS 381
P+ S
Sbjct: 175 MPSTS 179
>SPCC584.14 |mug160||conserved eukaryotic
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 431
Score = 25.0 bits (52), Expect = 9.8
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = +1
Query: 283 LREAGVDCVTLGQYMQPTKKHLKVFEYVTPAGSAVGGARPQLGFCTWPAEPGALVLQ 453
+RE V C L +Q ++ K+ +TP + A + GF ++ + G +VLQ
Sbjct: 369 IREISVLCTRL--LLQNNIENQKIIGGLTPITTTHSDALEEAGFTSYINDKGKVVLQ 423
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,462,197
Number of Sequences: 5004
Number of extensions: 45375
Number of successful extensions: 134
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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