Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0251
(666 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0849 + 32433429-32433743,32433840-32434021,32434235-324343... 104 7e-23
04_04_0096 - 22777684-22777797,22778668-22779047,22779162-227793... 97 1e-20
05_06_0043 + 25143513-25143866,25144010-25144191,25144284-251443... 58 8e-09
05_05_0256 - 23647736-23648947 31 0.62
08_02_1583 + 28036125-28037030,28037411-28037656 31 1.1
10_03_0023 - 7151465-7152111,7152222-7152405 29 3.3
05_01_0315 - 2468267-2468293,2469021-2469070,2469159-2469234,246... 29 3.3
03_05_0967 + 29265465-29266214,29267718-29267944,29268428-292685... 29 3.3
02_05_0367 - 28331479-28332358,28332432-28332988,28333454-283336... 29 3.3
01_07_0344 - 42869465-42869502,42869597-42869771,42869923-428701... 29 3.3
04_04_0214 - 23674270-23676858,23677574-23680843,23680941-236811... 29 4.4
09_04_0496 + 18079905-18081586,18084825-18084868,18086396-180865... 28 5.8
02_05_1114 + 34218218-34218463,34219143-34219179,34219450-342196... 28 7.7
>01_06_0849 +
32433429-32433743,32433840-32434021,32434235-32434310,
32434413-32434570,32435567-32435738,32435817-32435927,
32436197-32436280
Length = 365
Score = 104 bits (249), Expect = 7e-23
Identities = 69/162 (42%), Positives = 83/162 (51%), Gaps = 2/162 (1%)
Frame = +2
Query: 17 ILVECLVPDFRAVRGCVARVASSGLDVFAHNVETVERLTPFVRDPRAGYRQTLKVLQMAK 196
ILVECL DFR V+ +A+SGLDVFAHN+ETV L VRDPRAGY Q+L VL+ AK
Sbjct: 197 ILVECLTSDFRGDLEAVSALANSGLDVFAHNIETVRSLQRIVRDPRAGYDQSLAVLKHAK 256
Query: 197 EINPDLITKSSIMLGLGETARKWSRP-*KIYARREWTA*RWAXXXXXXXXXXXXXXXXXX 373
+ITKSSIMLGLGET + + + A
Sbjct: 257 SCKEGMITKSSIMLGLGETDEEVKQAMIDLRAIGVDILTLGQYLQPTERHLTVREYVTPE 316
Query: 374 XVQQWEARGRS-SASVRGQRSLVRSSYRAGEFFISAXLRDKK 496
Q W+ G S LVRSSYRAGE F+ +R+ K
Sbjct: 317 KFQFWKEYGESVGFRYVASGPLVRSSYRAGELFVQNLVRNNK 358
Score = 57.2 bits (132), Expect = 1e-08
Identities = 25/38 (65%), Positives = 31/38 (81%)
Frame = +1
Query: 259 QVEQTMKDLREAGVDCVTLGQYMQPTKKHLKVFEYVTP 372
+V+Q M DLR GVD +TLGQY+QPT++HL V EYVTP
Sbjct: 278 EVKQAMIDLRAIGVDILTLGQYLQPTERHLTVREYVTP 315
>04_04_0096 -
22777684-22777797,22778668-22779047,22779162-22779373,
22780119-22780561
Length = 382
Score = 96.7 bits (230), Expect = 1e-20
Identities = 71/177 (40%), Positives = 95/177 (53%), Gaps = 11/177 (6%)
Frame = +2
Query: 14 DILVECLVPDFRAVRGCVARVASSGLDVFAHNVETVERLTPFVRDPRAGYRQTLKVLQMA 193
++L+E LVPDFR CV +VA+SGL VFAHN+ETVE L VRD RA ++Q++ VL++A
Sbjct: 212 EMLIEALVPDFRGDPACVEKVATSGLHVFAHNIETVEELQRNVRDHRANFKQSIDVLKLA 271
Query: 194 KEINP-DLITKSSIMLGLGETARKWSRP*KIYARREWTA*RWAXXXXXXXXXXXXXXXXX 370
KE P +TK+SIMLG GET P ++ + E R A
Sbjct: 272 KEYAPAGTLTKTSIMLGCGET------PDQVISTTEKV--RAAGVDVMTFGQYMRPSKRH 323
Query: 371 XXVQQW---EA--RGRSSASVRGQR-----SLVRSSYRAGEFFISAXLRDKKVTRNT 511
V ++ EA R RS G R +VRSSY+AGEF+I A + + T
Sbjct: 324 MPVSEYVTPEAFERYRSLGVDMGFRYVASGPMVRSSYKAGEFYIKAMIEADRAKATT 380
Score = 51.6 bits (118), Expect = 5e-07
Identities = 22/38 (57%), Positives = 29/38 (76%)
Frame = +1
Query: 259 QVEQTMKDLREAGVDCVTLGQYMQPTKKHLKVFEYVTP 372
QV T + +R AGVD +T GQYM+P+K+H+ V EYVTP
Sbjct: 295 QVISTTEKVRAAGVDVMTFGQYMRPSKRHMPVSEYVTP 332
>05_06_0043 +
25143513-25143866,25144010-25144191,25144284-25144374,
25144452-25144568,25144922-25144976,25145008-25145093,
25145190-25145300,25145564-25145608,25145695-25145740,
25146078-25146152,25146902-25146971,25147128-25147437,
25147778-25147851,25147996-25148151,25148416-25148539
Length = 631
Score = 57.6 bits (133), Expect = 8e-09
Identities = 25/38 (65%), Positives = 32/38 (84%)
Frame = +1
Query: 259 QVEQTMKDLREAGVDCVTLGQYMQPTKKHLKVFEYVTP 372
+V+QTM DLR VD +TLGQY+QPT++HL+V EYVTP
Sbjct: 272 EVKQTMCDLRAIDVDILTLGQYLQPTERHLRVREYVTP 309
Score = 50.8 bits (116), Expect = 1e-06
Identities = 23/35 (65%), Positives = 27/35 (77%)
Frame = +2
Query: 17 ILVECLVPDFRAVRGCVARVASSGLDVFAHNVETV 121
ILVECL DFR V+ +ASSGLDVFAHN+ET+
Sbjct: 215 ILVECLTSDFRGDLEAVSSLASSGLDVFAHNIETI 249
>05_05_0256 - 23647736-23648947
Length = 403
Score = 31.5 bits (68), Expect = 0.62
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -1
Query: 204 FISLAICKTFNVWRYPALGSRTKGVSLSTVSTLCANTSRPLEATRATQPRTA 49
F++ K++NV YP LGS S +T + ++ S + AT TA
Sbjct: 315 FVARGCSKSYNVADYPGLGSAPASTSWTTTESTTSSRSSSMAPDGATPAETA 366
>08_02_1583 + 28036125-28037030,28037411-28037656
Length = 383
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Frame = -1
Query: 366 HVLEHLEVLLRGLH-VLAQRYAVHSRLA*I----FHGLLHLRAVSPSPSMMDD 223
+V +HLE+L G + + R V+SR + FH + R VSP+P ++DD
Sbjct: 296 NVGDHLEILSNGRYRSVLHRVKVNSRRLRVSVASFHSVAPERVVSPAPELIDD 348
>10_03_0023 - 7151465-7152111,7152222-7152405
Length = 276
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = -1
Query: 177 FNVWRYPALGSRTKGVSLSTVSTLCANTSRPLEATRATQPRTAR 46
F V P SR V+ +V L +N +RP + AT TAR
Sbjct: 90 FRVHLPPEAKSRLASVTSCSVKLLASNAARPCDDAAATSAATAR 133
>05_01_0315 -
2468267-2468293,2469021-2469070,2469159-2469234,
2469498-2469575,2469967-2470048,2470146-2470238,
2470564-2470673,2470831-2470893,2471293-2471344,
2471421-2471545,2472681-2472794,2472917-2472961,
2473278-2473337,2474725-2474778,2474944-2474992,
2475071-2475252,2475349-2475404,2475491-2475584
Length = 469
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/54 (29%), Positives = 22/54 (40%)
Frame = -1
Query: 237 SMMDDFVIKSGFISLAICKTFNVWRYPALGSRTKGVSLSTVSTLCANTSRPLEA 76
S + F+I G ++ K F +WRY S GV C N LE+
Sbjct: 267 SPFEIFIISYGVLNFMWLKFFLIWRYFRFWSLVGGVETPENMPRCINNCHDLES 320
>03_05_0967 +
29265465-29266214,29267718-29267944,29268428-29268557,
29268651-29268719,29268803-29268946,29269775-29270011,
29270897-29270998,29271131-29271396,29271766-29273410,
29274449-29275018
Length = 1379
Score = 29.1 bits (62), Expect = 3.3
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Frame = +1
Query: 316 GQYMQPTKKHLKVFEYVTPA---GSAVGGARPQLGFCTWPAEPGALVLQGRRVLHQRRAA 486
GQ P +H +F+YV P G+ +GGA G P PG +GR R A
Sbjct: 238 GQGFHP--QHHSMFKYVRPGATLGAPLGGAPTATGQFRPPGPPGPFAGRGRG--DWRPGA 293
Query: 487 GQEGNSQYG 513
G+ N +G
Sbjct: 294 GRGMNKGFG 302
>02_05_0367 -
28331479-28332358,28332432-28332988,28333454-28333671,
28333748-28333831,28334199-28334373,28334572-28334574
Length = 638
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +1
Query: 343 HLKVFEYVTPAGSAVGGARPQLGFCTWPAEPGAL 444
H + F ++ A AV GA P+LG CT P +P L
Sbjct: 341 HTEGFRFLDRA--AVVGANPKLGTCTQPRDPWKL 372
>01_07_0344 -
42869465-42869502,42869597-42869771,42869923-42870117,
42870678-42870788,42870899-42871111,42871551-42871658,
42871732-42871873,42872150-42873449,42874032-42874085,
42874491-42874923
Length = 922
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = -1
Query: 249 SPSPSMMDDFVIKSGFISLAICKTFNVWRYPALGSRTKGVSLSTVSTLCANTSRP 85
S +PS+M + GF S + + P LGSR+ G SLS+ L ++ P
Sbjct: 372 SMNPSVMRSQINAGGFTSFNNSSVGSGFASPRLGSRSPGGSLSSRQNLTGASNLP 426
>04_04_0214 - 23674270-23676858,23677574-23680843,23680941-23681119,
23681200-23681559,23681645-23682086,23682199-23682332,
23682479-23682680
Length = 2391
Score = 28.7 bits (61), Expect = 4.4
Identities = 23/75 (30%), Positives = 30/75 (40%), Gaps = 3/75 (4%)
Frame = -2
Query: 419 VQKPSCGRAPPTAEPAGVTYSNTLRCFFVGCMYWPSVTQSTPASRRSFMVCSTCARSRR- 243
V + S GR PT E + ++ LRC V + S QS +V C R R
Sbjct: 2066 VGEVSIGRNLPTEETEKLEFNPFLRCPEVDVIPATSCAQSASIDHGRSLVYEICQRLRNG 2125
Query: 242 --VPA*WTTSLLNQD 204
+PA W L D
Sbjct: 2126 EPLPASWRAFLEQSD 2140
>09_04_0496 + 18079905-18081586,18084825-18084868,18086396-18086502,
18087069-18087674,18087789-18088013,18088102-18088167,
18088268-18088336,18088511-18088582,18088672-18088848,
18089978-18090115
Length = 1061
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -3
Query: 172 RLAVPRPGVTHEGRESLDGLDVVREHVEAAGGHARHAAPDGSEVRHQ 32
+L + +PG+ H G + DV R ++A G A DGS+ HQ
Sbjct: 979 QLQLSQPGLIHGGTAGMANPDVFRRIIQAQLG-----AKDGSQASHQ 1020
>02_05_1114 +
34218218-34218463,34219143-34219179,34219450-34219633,
34219725-34219873,34220271-34220504,34220592-34220781,
34220863-34220988,34221386-34221485,34221598-34221957
Length = 541
Score = 27.9 bits (59), Expect = 7.7
Identities = 19/91 (20%), Positives = 37/91 (40%), Gaps = 4/91 (4%)
Frame = -1
Query: 276 HGLLHLRAVSPSPSMMDDFVIKSGFISLAICKTFN----VWRYPALGSRTKGVSLSTVST 109
+GLL+ P+P + + + TFN + Y ++G++L ++
Sbjct: 373 YGLLNTTTFEPNPDYYSALLWNRLMGTKVLSATFNGTNKIRAYAHCARDSRGITLLLINL 432
Query: 108 LCANTSRPLEATRATQPRTARKSGTRHSTRM 16
NT+ + QP + +K G R R+
Sbjct: 433 SGNNTNHIYVTSEGVQPYSTKKEGRRRFGRI 463
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,847,952
Number of Sequences: 37544
Number of extensions: 394192
Number of successful extensions: 1353
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1352
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -