Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0251
         (666 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46381-3|CAA86516.1|  354|Caenorhabditis elegans Hypothetical pr...   117   7e-27
Z99280-3|CAE18018.1|  215|Caenorhabditis elegans Hypothetical pr...    29   3.0  
U28928-12|AAL16320.2|  597|Caenorhabditis elegans Hypothetical p...    28   5.2  
AC024746-14|AAF60406.1|  227|Caenorhabditis elegans Hypothetical...    27   9.1  
AC024746-13|AAF60407.2|  480|Caenorhabditis elegans Hypothetical...    27   9.1  

>Z46381-3|CAA86516.1|  354|Caenorhabditis elegans Hypothetical
           protein M01F1.3 protein.
          Length = 354

 Score =  117 bits (282), Expect = 7e-27
 Identities = 67/163 (41%), Positives = 94/163 (57%), Gaps = 2/163 (1%)
 Frame = +2

Query: 14  DILVECLVPDFRAVRGCVARVASSGLDVFAHNVETVERLTPFVRDPRAGYRQTLKVLQMA 193
           ++L+ECL+PDF   +  V ++A+SGLDV+AHN+ETVERLTP+VRDPRA YRQ+L  L+ A
Sbjct: 191 ELLIECLLPDFAGDKISVEKMATSGLDVYAHNIETVERLTPWVRDPRAKYRQSLDALRYA 250

Query: 194 KEINPDLITKSSIMLGLGETARKWSR-P*KIYARREWTA*RWAXXXXXXXXXXXXXXXXX 370
           KE++P LITK+SIMLGLGE   +  +    + A                           
Sbjct: 251 KEVSPKLITKTSIMLGLGEAEDEIKQCLADLRASNVDVVTFGQYMQPTKRHLLVKEWVTP 310

Query: 371 XXVQQWEARGRSSASVR-GQRSLVRSSYRAGEFFISAXLRDKK 496
               QW    +    +      LVRSSY+AGEF++   LR+++
Sbjct: 311 EKFDQWAEYSKKLGFLYVASGPLVRSSYKAGEFYLKNVLRNRQ 353



 Score = 54.4 bits (125), Expect = 7e-08
 Identities = 23/38 (60%), Positives = 30/38 (78%)
 Frame = +1

Query: 259 QVEQTMKDLREAGVDCVTLGQYMQPTKKHLKVFEYVTP 372
           +++Q + DLR + VD VT GQYMQPTK+HL V E+VTP
Sbjct: 273 EIKQCLADLRASNVDVVTFGQYMQPTKRHLLVKEWVTP 310


>Z99280-3|CAE18018.1|  215|Caenorhabditis elegans Hypothetical
           protein Y57G11B.7 protein.
          Length = 215

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 23/73 (31%), Positives = 32/73 (43%)
 Frame = -1

Query: 390 SHC*TGGGHVLEHLEVLLRGLHVLAQRYAVHSRLA*IFHGLLHLRAVSPSPSMMDDFVIK 211
           S C T G  +  HL   ++ L   AQ Y        +FHG LHLR ++   +  +     
Sbjct: 18  SSCDTDG--IPNHLHCSIKNLTRDAQNYLEWPEWCQVFHGNLHLRMINLKTANFEKLREI 75

Query: 210 SGFISLAICKTFN 172
            G +SL I   FN
Sbjct: 76  RGTLSL-INSPFN 87


>U28928-12|AAL16320.2|  597|Caenorhabditis elegans Hypothetical
           protein C44B7.2a protein.
          Length = 597

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
 Frame = +3

Query: 237 WDSARPR---ASGADHERSTRGGSGLRNAGPVHAAHEEAP 347
           W  A PR    SG +  R   GG G R  G +  AH  +P
Sbjct: 507 WAYATPRRWDGSGGEPPRYEEGGDGERKEGFIQPAHRPSP 546


>AC024746-14|AAF60406.1|  227|Caenorhabditis elegans Hypothetical
           protein Y110A2AL.12b protein.
          Length = 227

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 17/67 (25%), Positives = 26/67 (38%)
 Frame = +2

Query: 392 ARGRSSASVRGQRSLVRSSYRAGEFFISAXLRDKKVTRNTGRRLALISKLISLRCGKRNC 571
           A      S+ G  ++  +S   GEF     +R K   R   +  AL   L  ++     C
Sbjct: 55  ANAEGLTSLMGYLTIFYASLAIGEFMAKTSIRIKSWIRRCFQLFALSLILFFIQIAAEKC 114

Query: 572 IP*YCRR 592
           +   CRR
Sbjct: 115 VDPPCRR 121


>AC024746-13|AAF60407.2|  480|Caenorhabditis elegans Hypothetical
           protein Y110A2AL.12a protein.
          Length = 480

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 17/67 (25%), Positives = 26/67 (38%)
 Frame = +2

Query: 392 ARGRSSASVRGQRSLVRSSYRAGEFFISAXLRDKKVTRNTGRRLALISKLISLRCGKRNC 571
           A      S+ G  ++  +S   GEF     +R K   R   +  AL   L  ++     C
Sbjct: 308 ANAEGLTSLMGYLTIFYASLAIGEFMAKTSIRIKSWIRRCFQLFALSLILFFIQIAAEKC 367

Query: 572 IP*YCRR 592
           +   CRR
Sbjct: 368 VDPPCRR 374


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,233,698
Number of Sequences: 27780
Number of extensions: 282347
Number of successful extensions: 767
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)