Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0251
         (666 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   6.0  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   6.0  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   6.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   6.0  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   6.0  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 490 VPQXGADEELSGPVGRAH 437
           +P  GAD++L GP   A+
Sbjct: 478 LPLPGADDDLFGPASPAY 495


>AY739659-1|AAU85298.1|  288|Apis mellifera
          hyperpolarization-activated ion channelvariant T
          protein.
          Length = 288

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 4  ALFGHPSGVPGAGLP 48
          +L+G P   PG GLP
Sbjct: 17 SLYGTPKEEPGPGLP 31


>AY739658-1|AAU85297.1|  664|Apis mellifera
          hyperpolarization-activated ion channelvariant L
          protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 4  ALFGHPSGVPGAGLP 48
          +L+G P   PG GLP
Sbjct: 17 SLYGTPKEEPGPGLP 31


>AY280848-1|AAQ16312.1|  632|Apis mellifera
          hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 4  ALFGHPSGVPGAGLP 48
          +L+G P   PG GLP
Sbjct: 17 SLYGTPKEEPGPGLP 31


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +2

Query: 92  DVFAHNVETVERLTPF 139
           +V+ +N+ET  +L+PF
Sbjct: 35  NVYKNNIETKNQLSPF 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,749
Number of Sequences: 438
Number of extensions: 3365
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)