Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0239
         (663 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc...    28   1.0  
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    27   2.4  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    25   7.4  
SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomy...    25   9.7  

>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
           Sen2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = -1

Query: 273 LFELFAGLNFISVVLKVE-EVTKLYSSPSLRSSTVGVTALAALRVIRPTPMVFMNSSKFS 97
           + +LFA +   SV L  +  + + +  P +      +T LAA    R    V  N +KFS
Sbjct: 216 ILKLFANIVANSVALTHDYSLQQSHEDPIIEPDNKFLTELAAYFYFRQQGWVVKNGTKFS 275

Query: 96  EEVILY 79
            + +LY
Sbjct: 276 VDFLLY 281


>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 456

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 30/131 (22%), Positives = 55/131 (41%)
 Frame = +2

Query: 17  LKTFLLNL*S*SIKMEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDG 196
           +K F+  L S  +  E + K    T+ +       +  +G    K  + V P + +  + 
Sbjct: 19  IKRFVFELSSLGLSAETISKLMAPTTVDPQQAITLSYSLG----KEGHIVVPKIIINVNF 74

Query: 197 DEYNLVTSSTFKTTEMKFKPAKSSKRTALTVLR*NPYAHSKATPSSKSRRPPTVLKSLTS 376
           D+       T K     FK   +S    +T +R N  ++  +TPS  +++PPT      S
Sbjct: 75  DKLK-----TDKFAASMFKQLNASNM--ITTVRSNYASNVPSTPSDSTQQPPTNTLPSVS 127

Query: 377 GNSA*GDESCD 409
            +S    E+C+
Sbjct: 128 ASSQ-SVETCE 137


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
 Frame = +2

Query: 182 LRKDGDEYNL----VTSSTFKTTEMKFKPAKSSKRTALTVLR*NPYAHSKATPS 331
           LR D  +Y L    +T+S   +    F P KSS +   T+   +  +H+ AT S
Sbjct: 361 LRADTKQYGLALPKITNSNLISPNQTFNPVKSSVKALPTLEPPSSPSHATATSS 414


>SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 764

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +2

Query: 80  YKMTSSENFDEFMKTIGVGLITR 148
           +K++S++  DEF++    G+ITR
Sbjct: 140 FKLSSTKALDEFLEAKEAGIITR 162


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,487,371
Number of Sequences: 5004
Number of extensions: 47731
Number of successful extensions: 129
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)