Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0239
         (663 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0192 - 5589395-5590021,5590120-5590560,5590781-5591242           31   1.1  
11_03_0087 - 9751791-9751926,9752852-9753063,9753285-9753347           28   5.8  
02_02_0007 + 6056281-6057024,6057273-6057539,6057622-6057765,605...    28   5.8  
03_02_0584 - 9650996-9651488,9651630-9652049,9652129-9652158,965...    28   7.6  

>09_02_0192 - 5589395-5590021,5590120-5590560,5590781-5591242
          Length = 509

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
 Frame = -1

Query: 345 LLDLLEGVAFECAYGFHL--STVSAVLFELFAGLNFISVVLKVEEVTKLYSSPSL 187
           L+D+L G+  +  +GFHL  S + A++ ++FAG    S       +++L  +PS+
Sbjct: 274 LVDVLIGLQGKGGFGFHLDNSKIKAIILDMFAGGTGTSASAMEWGMSELMRNPSV 328


>11_03_0087 - 9751791-9751926,9752852-9753063,9753285-9753347
          Length = 136

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 20/59 (33%), Positives = 29/59 (49%)
 Frame = +3

Query: 309 HIRRQHPQASPEGPRRS*SHLRQGIRPEEMKAVMTAKDVTCTRVYKVQ*KDSTPRSGVG 485
           H +R  P+AS +G R + S  R GI     +    AKD  C RV +++     P  G+G
Sbjct: 37  HKQRHEPEASSDGRRENISESR-GI-----ELTSFAKDGLCRRVVRLKSARRKPTKGMG 89


>02_02_0007 +
           6056281-6057024,6057273-6057539,6057622-6057765,
           6057844-6058191,6058713-6059102
          Length = 630

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
 Frame = -1

Query: 372 VSDFKTVGGLLD---LLEGVAFECAYGFHLSTVSAVLFELFAGLNFISVVLKVEEVTKLY 202
           + DF T  G+     +L G      +G+ ++        L  G+ F S++L  E +T L 
Sbjct: 396 MGDFSTATGIATFTMMLLGRVILRKFGWGVAATITPAVLLLTGVGFFSLILFGEPLTPLM 455

Query: 201 SSPSLRSSTVGVTALAALRVIRPTPMVFMNSSKFS 97
           +       T+G+T L A   +     +F  S+K+S
Sbjct: 456 A-------TLGMTPLLAAVYVGAMQNIFSKSAKYS 483


>03_02_0584 - 9650996-9651488,9651630-9652049,9652129-9652158,
            9652201-9652287,9652657-9653669,9653832-9654854,
            9654946-9654969
          Length = 1029

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -3

Query: 289  HRQRGPLRTLRRLELHLSGLEG*RGD*IVFVTILTELHGRGD 164
            H  RG  R +RR  +H  G+EG   +  +    L ELH + +
Sbjct: 896  HDDRGMQRNMRRCGMHHGGVEGDSFEPHLHPAQLAELHAKAE 937


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,170,845
Number of Sequences: 37544
Number of extensions: 352045
Number of successful extensions: 890
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)