Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0239
         (663 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50472-1|AAA93475.1|  141|Anopheles gambiae protein ( Anopheles ...    70   8e-14
AY341159-1|AAR13723.1|  159|Anopheles gambiae CED6 protein.            24   4.9  
AY341158-1|AAR13722.1|  159|Anopheles gambiae CED6 protein.            24   4.9  
AY341157-1|AAR13721.1|  159|Anopheles gambiae CED6 protein.            24   4.9  
U43499-1|AAA93302.1|  278|Anopheles gambiae a-emp protein.             23   8.6  

>U50472-1|AAA93475.1|  141|Anopheles gambiae protein ( Anopheles
           gambiae putativefatty acid binding protein mRNA, partial
           cds. ).
          Length = 141

 Score = 69.7 bits (163), Expect = 8e-14
 Identities = 30/55 (54%), Positives = 40/55 (72%)
 Frame = +2

Query: 71  GKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKT 235
           GKKYKM  SE FD++M  +GVG++ RK  N+++PTVEL K+GDEY   T S  +T
Sbjct: 35  GKKYKMEKSEGFDDYMLALGVGMVLRKLGNSISPTVELVKNGDEYTFNTLSPSRT 89



 Score = 39.5 bits (88), Expect = 9e-05
 Identities = 17/28 (60%), Positives = 20/28 (71%)
 Frame = +1

Query: 262 EFEEDRADGAKVKSVCTFEGNTLKQVQK 345
           EF+E+  DG  VKSVCTF+GN L   QK
Sbjct: 99  EFDEETVDGRMVKSVCTFDGNKLIHEQK 126


>AY341159-1|AAR13723.1|  159|Anopheles gambiae CED6 protein.
          Length = 159

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 149 KAANAVTPTVELRKDGDEYNLVTSST 226
           K    VTPT  +   GD+ N   +ST
Sbjct: 89  KTGTGVTPTSSIASSGDDTNSSNNST 114


>AY341158-1|AAR13722.1|  159|Anopheles gambiae CED6 protein.
          Length = 159

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 149 KAANAVTPTVELRKDGDEYNLVTSST 226
           K    VTPT  +   GD+ N   +ST
Sbjct: 89  KTGTGVTPTSSIASSGDDTNSSNNST 114


>AY341157-1|AAR13721.1|  159|Anopheles gambiae CED6 protein.
          Length = 159

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 149 KAANAVTPTVELRKDGDEYNLVTSST 226
           K    VTPT  +   GD+ N   +ST
Sbjct: 89  KTGTGVTPTSSIASSGDDTNSSNNST 114


>U43499-1|AAA93302.1|  278|Anopheles gambiae a-emp protein.
          Length = 278

 Score = 23.0 bits (47), Expect = 8.6
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 456 KDSTPRSGVGARRFTNXPG 512
           K+ T R GV   RFT  PG
Sbjct: 208 KEVTVRGGVKGYRFTTVPG 226


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 636,894
Number of Sequences: 2352
Number of extensions: 12434
Number of successful extensions: 28
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 66068490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)