Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0239
         (663 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81127-2|CAB03387.1|  137|Caenorhabditis elegans Hypothetical pr...    75   5e-14
Z81127-7|CAB03391.2|  137|Caenorhabditis elegans Hypothetical pr...    71   6e-13
AF003141-3|AAK21484.1|  135|Caenorhabditis elegans Lipid binding...    71   7e-13
AF003141-5|AAK21486.1|  136|Caenorhabditis elegans Lipid binding...    66   2e-11
AC024771-9|ABA61863.1|  137|Caenorhabditis elegans Lipid binding...    60   1e-09
AC024771-8|AAK70656.1|  152|Caenorhabditis elegans Lipid binding...    60   1e-09
U64855-7|AAB04984.1|  145|Caenorhabditis elegans Lipid binding p...    36   0.019
U28991-8|AAM22060.1|  517|Caenorhabditis elegans Hypothetical pr...    36   0.019
U28991-7|AAK68312.1|  626|Caenorhabditis elegans Hypothetical pr...    36   0.019
U28991-6|AAK68313.1|  624|Caenorhabditis elegans Hypothetical pr...    36   0.019
U40420-6|ABD63223.1|  150|Caenorhabditis elegans Lipid binding p...    31   0.55 
U40420-5|AAA81433.2|  165|Caenorhabditis elegans Lipid binding p...    31   0.55 
U40420-8|AAA81435.1|  161|Caenorhabditis elegans Lipid binding p...    29   3.9  
U40420-7|AAA81434.1|  159|Caenorhabditis elegans Lipid binding p...    29   3.9  
U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore co...    27   9.0  
AF039048-13|AAB94231.1|  440|Caenorhabditis elegans Hypothetical...    27   9.0  

>Z81127-2|CAB03387.1|  137|Caenorhabditis elegans Hypothetical
           protein T22G5.2 protein.
          Length = 137

 Score = 74.9 bits (176), Expect = 5e-14
 Identities = 34/64 (53%), Positives = 48/64 (75%)
 Frame = +2

Query: 62  EFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTE 241
           +F+G+ +K+  +ENFDE+MK IGVGLITRKAA  + P +E+R DG+ +N    STFK T+
Sbjct: 6   DFIGR-WKLVQTENFDEYMKEIGVGLITRKAAAHLKPILEIRLDGETWNFDQFSTFKNTK 64

Query: 242 MKFK 253
           + FK
Sbjct: 65  LSFK 68


>Z81127-7|CAB03391.2|  137|Caenorhabditis elegans Hypothetical
           protein T22G5.6 protein.
          Length = 137

 Score = 71.3 bits (167), Expect = 6e-13
 Identities = 31/64 (48%), Positives = 48/64 (75%)
 Frame = +2

Query: 62  EFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTE 241
           EF+G+ +K+  SENF+E++K IGVGL+ RKAA+  +PT+E++ DGD ++    STFK  +
Sbjct: 6   EFIGR-WKLVHSENFEEYLKEIGVGLLIRKAASLTSPTLEIKLDGDTWHFNQYSTFKNNK 64

Query: 242 MKFK 253
           + FK
Sbjct: 65  LAFK 68


>AF003141-3|AAK21484.1|  135|Caenorhabditis elegans Lipid binding
           protein protein 6 protein.
          Length = 135

 Score = 70.9 bits (166), Expect = 7e-13
 Identities = 34/67 (50%), Positives = 48/67 (71%)
 Frame = +2

Query: 53  IKMEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFK 232
           +  EFVG+ +K+  SENF+E+MK +GVGLITRKAA  + PT+E++ +GD +     STFK
Sbjct: 1   MSQEFVGR-WKLIHSENFEEYMKEVGVGLITRKAAANLKPTLEIKVEGDLWYSNQYSTFK 59

Query: 233 TTEMKFK 253
            T + FK
Sbjct: 60  NTTLSFK 66



 Score = 31.9 bits (69), Expect = 0.42
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 256 GEEFEEDRADGAKVKSVCTFEGNTLKQVQK 345
           G+EF+E   DG  VKSV  FE      +QK
Sbjct: 68  GQEFDETTPDGRTVKSVVNFENGKFIHIQK 97


>AF003141-5|AAK21486.1|  136|Caenorhabditis elegans Lipid binding
           protein protein 5 protein.
          Length = 136

 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 28/63 (44%), Positives = 49/63 (77%)
 Frame = +2

Query: 62  EFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTE 241
           +FVG+ +K+  SENF++++K +GVGL+ RKAA A  PT+E++ +G+++++   STFK T 
Sbjct: 5   QFVGR-WKLVESENFEDYLKEVGVGLLLRKAACAAKPTLEIKVNGNKWHVNQLSTFKNTT 63

Query: 242 MKF 250
           ++F
Sbjct: 64  LEF 66



 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +1

Query: 244 EVQAGEEFEEDRADGAKVKSVCTFEGNTLKQVQK 345
           E   G EF+E   DG + KS  T E   +  VQK
Sbjct: 65  EFTLGVEFDETTPDGRQFKSTITIEDGKVVHVQK 98


>AC024771-9|ABA61863.1|  137|Caenorhabditis elegans Lipid binding
           protein protein 9,isoform b protein.
          Length = 137

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
 Frame = +2

Query: 53  IKMEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFK 232
           I+ + VGK +   SSENFDE++K +GVG   R  A    P +E   +GDE+ + ++STFK
Sbjct: 3   IQTDLVGK-WNFVSSENFDEYLKEVGVGWAIRTIATKTKPALEFAVNGDEWTMNSNSTFK 61

Query: 233 TTEMKFK-PAKSSKRTA 280
              +K+K    S ++TA
Sbjct: 62  NYTLKWKLGTASDEKTA 78


>AC024771-8|AAK70656.1|  152|Caenorhabditis elegans Lipid binding
           protein protein 9,isoform a protein.
          Length = 152

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
 Frame = +2

Query: 53  IKMEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFK 232
           I+ + VGK +   SSENFDE++K +GVG   R  A    P +E   +GDE+ + ++STFK
Sbjct: 18  IQTDLVGK-WNFVSSENFDEYLKEVGVGWAIRTIATKTKPALEFAVNGDEWTMNSNSTFK 76

Query: 233 TTEMKFK-PAKSSKRTA 280
              +K+K    S ++TA
Sbjct: 77  NYTLKWKLGTASDEKTA 93


>U64855-7|AAB04984.1|  145|Caenorhabditis elegans Lipid binding
           protein protein 4 protein.
          Length = 145

 Score = 36.3 bits (80), Expect = 0.019
 Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
 Frame = +2

Query: 50  SIKMEFVGKKYKMTSSENFDEFMKTIGVGLITRKAAN--AVTPTVELRKDGDEYNLVTSS 223
           S+  +F G+ Y++  SENFDEF+ + GV    R+      +T  +   ++  +YN+   +
Sbjct: 2   SVPDKFFGR-YQLDKSENFDEFLSSKGVNWFVRQMIKLAGLTKIISQNQEAGKYNMENLT 60

Query: 224 TFKTT 238
           + K T
Sbjct: 61  SKKNT 65


>U28991-8|AAM22060.1|  517|Caenorhabditis elegans Hypothetical
           protein F08F8.9c protein.
          Length = 517

 Score = 36.3 bits (80), Expect = 0.019
 Identities = 23/61 (37%), Positives = 30/61 (49%)
 Frame = +2

Query: 92  SSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPAKSSK 271
           SSE  ++ +  IGV L  RK  +A  P      DG+    V +ST K  E K KP K  K
Sbjct: 2   SSEWDNKIIPVIGVPLEARKLPSARIPKKPKETDGNSTETVVNSTEKPEERKEKPPKPPK 61

Query: 272 R 274
           +
Sbjct: 62  Q 62


>U28991-7|AAK68312.1|  626|Caenorhabditis elegans Hypothetical
           protein F08F8.9a protein.
          Length = 626

 Score = 36.3 bits (80), Expect = 0.019
 Identities = 23/61 (37%), Positives = 30/61 (49%)
 Frame = +2

Query: 92  SSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPAKSSK 271
           SSE  ++ +  IGV L  RK  +A  P      DG+    V +ST K  E K KP K  K
Sbjct: 2   SSEWDNKIIPVIGVPLEARKLPSARIPKKPKETDGNSTETVVNSTEKPEERKEKPPKPPK 61

Query: 272 R 274
           +
Sbjct: 62  Q 62


>U28991-6|AAK68313.1|  624|Caenorhabditis elegans Hypothetical
           protein F08F8.9b protein.
          Length = 624

 Score = 36.3 bits (80), Expect = 0.019
 Identities = 23/61 (37%), Positives = 30/61 (49%)
 Frame = +2

Query: 92  SSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPAKSSK 271
           SSE  ++ +  IGV L  RK  +A  P      DG+    V +ST K  E K KP K  K
Sbjct: 2   SSEWDNKIIPVIGVPLEARKLPSARIPKKPKETDGNSTETVVNSTEKPEERKEKPPKPPK 61

Query: 272 R 274
           +
Sbjct: 62  Q 62


>U40420-6|ABD63223.1|  150|Caenorhabditis elegans Lipid binding
           protein protein 3,isoform b protein.
          Length = 150

 Score = 31.5 bits (68), Expect = 0.55
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = +2

Query: 53  IKMEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKD--GDEYNLVTSST 226
           I  +F GK Y +  SENFDEF+   GV    R+       +  L K+    +YN+   ++
Sbjct: 8   IPEKFFGK-YDLDRSENFDEFLAAKGVSWFVRQMIKLAKVSKVLAKNETPGKYNMENLTS 66

Query: 227 FKTT 238
            K T
Sbjct: 67  KKNT 70


>U40420-5|AAA81433.2|  165|Caenorhabditis elegans Lipid binding
           protein protein 3,isoform a protein.
          Length = 165

 Score = 31.5 bits (68), Expect = 0.55
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = +2

Query: 53  IKMEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKD--GDEYNLVTSST 226
           I  +F GK Y +  SENFDEF+   GV    R+       +  L K+    +YN+   ++
Sbjct: 23  IPEKFFGK-YDLDRSENFDEFLAAKGVSWFVRQMIKLAKVSKVLAKNETPGKYNMENLTS 81

Query: 227 FKTT 238
            K T
Sbjct: 82  KKNT 85


>U40420-8|AAA81435.1|  161|Caenorhabditis elegans Lipid binding
           protein protein 2 protein.
          Length = 161

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 80  YKMTSSENFDEFMKTIGVGLITRKAANAVT 169
           + +  SENFDE++   G G  TRK     T
Sbjct: 30  FDLDHSENFDEYLTAKGYGWFTRKLVTFAT 59


>U40420-7|AAA81434.1|  159|Caenorhabditis elegans Lipid binding
           protein protein 1 protein.
          Length = 159

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 80  YKMTSSENFDEFMKTIGVGLITRKAANAVT 169
           + +  SENFDE++   G G  TRK     T
Sbjct: 28  FDLDHSENFDEYLTAKGYGWFTRKLVTFAT 57


>U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore
           complex protein protein7 protein.
          Length = 1217

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = -1

Query: 246 FISVVLKVEEVTKLYSSPSLRSSTVGVTALAALRVIRPTPMVFMNSS 106
           F S++ K   VT    S +L SST    + +A+  I PT  +F NSS
Sbjct: 845 FGSILDKETHVTTTPVSVALPSSTDSTQSKSAIPTIAPTMSLFGNSS 891


>AF039048-13|AAB94231.1|  440|Caenorhabditis elegans Hypothetical
           protein F16B4.11 protein.
          Length = 440

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 125 IGVGLITRKAANAVTPTVELRKDGDEYNL 211
           + + L+  KA N +   V +RKDGD  NL
Sbjct: 166 VDISLLVDKATNYILNPVLIRKDGDMSNL 194


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,973,896
Number of Sequences: 27780
Number of extensions: 276278
Number of successful extensions: 848
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)