Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0239
         (663 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g03480.1 68417.m00475 ankyrin repeat family protein contains ...    30   1.6  
At3g19970.1 68416.m02527 expressed protein                             28   6.4  
At1g69850.1 68414.m08039 nitrate transporter (NTL1) identical to...    27   8.4  
At1g27040.2 68414.m03296 nitrate transporter, putative contains ...    27   8.4  
At1g27040.1 68414.m03297 nitrate transporter, putative contains ...    27   8.4  

>At4g03480.1 68417.m00475 ankyrin repeat family protein contains
           ankyrin repeats, Pfam domain PF00023
          Length = 617

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 300 IRMHIRRQHPQASPEGPRRS*SHLRQGIRPEEMKAVMTAKD 422
           +R H+ R  P+ASP  P  S S+ R  + P E++      D
Sbjct: 2   VRSHLLRATPEASPLKPASSPSNCRLSLSPVELRLYFIRDD 42


>At3g19970.1 68416.m02527 expressed protein
          Length = 434

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = -1

Query: 285 VSAVLFELFAGLNFIS-VVLKVEEVTKLYSSPSLRSSTVGVTALAALRVI 139
           VS V     A L+F+S + + V  V  L S+PS   +T  VT+L+ALR +
Sbjct: 62  VSQVSASKLADLSFVSRICVPVPNVDLLASNPSCSLAT-SVTSLSALRSV 110


>At1g69850.1 68414.m08039 nitrate transporter (NTL1) identical to
           nitrate transporter (NTL1) GI:3377517 [Arabidopsis
           thaliana]
          Length = 585

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 83  KMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDG 196
           K T +E     ++ IGVGL+    A AV   VE+++ G
Sbjct: 414 KATKTETGVTHLQRIGVGLVLSILAMAVAALVEIKRKG 451


>At1g27040.2 68414.m03296 nitrate transporter, putative contains
           Pfam profile: PF00854 POT family; similar to nitrate
           transporter (NTL1) GI:3377517 [Arabidopsis thaliana]
          Length = 563

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +2

Query: 83  KMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRK 190
           K+T SE     ++ IGVGL+    A AV   VEL++
Sbjct: 393 KVTKSEIGITHLQRIGVGLVLSIVAMAVAALVELKR 428


>At1g27040.1 68414.m03297 nitrate transporter, putative contains
           Pfam profile: PF00854 POT family; similar to nitrate
           transporter (NTL1) GI:3377517 [Arabidopsis thaliana]
          Length = 567

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +2

Query: 83  KMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRK 190
           K+T SE     ++ IGVGL+    A AV   VEL++
Sbjct: 397 KVTKSEIGITHLQRIGVGLVLSIVAMAVAALVELKR 432


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,319,110
Number of Sequences: 28952
Number of extensions: 266924
Number of successful extensions: 720
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)