Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0238
         (657 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...   117   3e-25
UniRef50_Q9EPJ7 Cluster: Glucocorticoid induced receptor; n=4; E...    35   1.5  
UniRef50_UPI0000E46784 Cluster: PREDICTED: similar to endonuclea...    34   2.6  
UniRef50_UPI0000E4A923 Cluster: PREDICTED: similar to angiotensi...    33   4.6  
UniRef50_Q4SJG3 Cluster: Chromosome 4 SCAF14575, whole genome sh...    33   6.0  
UniRef50_Q8YJN0 Cluster: Putative uncharacterized protein BMEI00...    33   6.0  
UniRef50_A0IWN3 Cluster: Putative uncharacterized protein; n=1; ...    33   6.0  
UniRef50_Q4DJ85 Cluster: Putative uncharacterized protein; n=2; ...    33   8.0  

>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score =  117 bits (281), Expect = 3e-25
 Identities = 53/61 (86%), Positives = 57/61 (93%)
 Frame = -2

Query: 488  TARYRSRVHPYYLEPLRSSPVRXQRSFLPRTIRLWNELPSTVFPERNDISFFKRGLWQHL 309
            TAR+RSRVHPYYLEPLRSS VR QRSFLPRTIRLWNELPSTVFPER D+SFFKRGLW+ L
Sbjct: 908  TARHRSRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTVFPERYDMSFFKRGLWRVL 967

Query: 308  T 306
            +
Sbjct: 968  S 968



 Score = 39.9 bits (89), Expect = 0.053
 Identities = 19/27 (70%), Positives = 22/27 (81%)
 Frame = -1

Query: 333  QKRLVAALNGRQRLGSALGIAEVHGRR 253
            ++ L   L+GRQRLGSA GIAEVHGRR
Sbjct: 960  KRGLWRVLSGRQRLGSAPGIAEVHGRR 986


>UniRef50_Q9EPJ7 Cluster: Glucocorticoid induced receptor; n=4;
           Eutheria|Rep: Glucocorticoid induced receptor - Mus
           musculus (Mouse)
          Length = 463

 Score = 35.1 bits (77), Expect = 1.5
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
 Frame = -2

Query: 293 LARPLALLKSMGDVTTQHHVGRRIHKKTSVNCALIYIYRKSKSHSTLNSFFLLLTRT--- 123
           +A+ L L  ++GDVTT+ ++  R  KKT+V   ++ +   +     LN + LLL+     
Sbjct: 319 VAKKLWLCNTIGDVTTEQYLALRRKKKTTVKMLVLVVVLFALCWFPLNCYVLLLSSKAIH 378

Query: 122 TNFQSYF 102
           TN   YF
Sbjct: 379 TNNALYF 385


>UniRef50_UPI0000E46784 Cluster: PREDICTED: similar to
           endonuclease/reverse transcriptase; n=1;
           Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
           endonuclease/reverse transcriptase - Strongylocentrotus
           purpuratus
          Length = 576

 Score = 34.3 bits (75), Expect = 2.6
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = -2

Query: 464 HPYYLEPLRSSPVRXQRSFLPRTIRLWNELPSTVFPERNDISFFKRGLWQHLTVGSGLAR 285
           H  +   +R      + +F PRTIR WN L  ++F   + +  FK  LW+ +  G+ +  
Sbjct: 401 HNLFFSNIRCKTDIYRLTFFPRTIRAWNLLSPSIF-ACDAVETFKARLWEAIQGGNIIIV 459

Query: 284 P 282
           P
Sbjct: 460 P 460


>UniRef50_UPI0000E4A923 Cluster: PREDICTED: similar to angiotensin
           converting enzyme, partial; n=3; Strongylocentrotus
           purpuratus|Rep: PREDICTED: similar to angiotensin
           converting enzyme, partial - Strongylocentrotus
           purpuratus
          Length = 926

 Score = 33.5 bits (73), Expect = 4.6
 Identities = 12/16 (75%), Positives = 15/16 (93%)
 Frame = -2

Query: 413 SFLPRTIRLWNELPST 366
           SF PRTIR+WN+LP+T
Sbjct: 887 SFYPRTIRIWNQLPAT 902


>UniRef50_Q4SJG3 Cluster: Chromosome 4 SCAF14575, whole genome
           shotgun sequence; n=2; Tetraodontidae|Rep: Chromosome 4
           SCAF14575, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 821

 Score = 33.1 bits (72), Expect = 6.0
 Identities = 19/48 (39%), Positives = 24/48 (50%)
 Frame = -3

Query: 457 TTWSHCVHPQCASRDLFCHGPSGFGMSSPPRCFPSXMTYPSSKEACGS 314
           +TWS    P+C+SR  +  G  G+   S PRC     T P S E  GS
Sbjct: 598 STWSRTSRPRCSSRAPWSSGRPGWRTWS-PRCSSRTSTGPVSPERPGS 644


>UniRef50_Q8YJN0 Cluster: Putative uncharacterized protein BMEI0052;
           n=6; Alphaproteobacteria|Rep: Putative uncharacterized
           protein BMEI0052 - Brucella melitensis
          Length = 249

 Score = 33.1 bits (72), Expect = 6.0
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = +2

Query: 257 RPWTSAMPRAEPSRCLPLSAATSLF*RRICHXARETPWRGAHSK 388
           R W S+     P RCLPL+ A S     +C    E  W G  +K
Sbjct: 22  RSWMSSFHSRAPYRCLPLTMANSTGWEILCPTDIEVSWNGGLAK 65


>UniRef50_A0IWN3 Cluster: Putative uncharacterized protein; n=1;
           Serratia proteamaculans 568|Rep: Putative
           uncharacterized protein - Serratia proteamaculans 568
          Length = 173

 Score = 33.1 bits (72), Expect = 6.0
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = -2

Query: 404 PRTIRLWNELPSTVFPERNDISFFKRGLWQHLTVGSGL 291
           P    L N  P+   P +  +SFF+ GL QH TVGS L
Sbjct: 96  PHGFVLANATPTDFHPMKGRLSFFEAGLRQHPTVGSVL 133


>UniRef50_Q4DJ85 Cluster: Putative uncharacterized protein; n=2;
           Trypanosoma cruzi|Rep: Putative uncharacterized protein
           - Trypanosoma cruzi
          Length = 1303

 Score = 32.7 bits (71), Expect = 8.0
 Identities = 22/57 (38%), Positives = 31/57 (54%)
 Frame = -2

Query: 425 RXQRSFLPRTIRLWNELPSTVFPERNDISFFKRGLWQHLTVGSGLARPLALLKSMGD 255
           R +R   P +  LW EL S+V   R+ +S  + G  + L  GSG   PL+L  S+GD
Sbjct: 609 RDRRLSSPVSTLLW-ELQSSV-TLRHAVSILQGGSSRQLPTGSGGVNPLSLTPSLGD 663


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 620,961,248
Number of Sequences: 1657284
Number of extensions: 12377926
Number of successful extensions: 27430
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 26767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27424
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49586781480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)