Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0238
         (657 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    23   2.2  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    22   3.9  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    22   3.9  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        21   6.7  

>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 393 DGPWQKRSLXAHWG*TQWL 449
           DG WQ+ +L A+   T W+
Sbjct: 223 DGEWQRDNLNANSSITHWI 241


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -3

Query: 442 CVHPQCASRDLFCHG 398
           C + +C  ++LFC+G
Sbjct: 116 CGNGECIDKELFCNG 130


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -3

Query: 442 CVHPQCASRDLFCHG 398
           C + +C  ++LFC+G
Sbjct: 123 CGNGECIDKELFCNG 137


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +2

Query: 251 LRRPWTSAMPRAEPSRCLPLSAATSLF*RR 340
           LRRP   A   A P   LPL +   +  R+
Sbjct: 325 LRRPSDGATSEALPFELLPLDSEPGMLKRK 354


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,811
Number of Sequences: 336
Number of extensions: 3346
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16969115
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)