Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0238
         (657 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0214 - 23674270-23676858,23677574-23680843,23680941-236811...    29   2.5  
11_06_0179 + 20952070-20955228                                         29   4.3  
10_05_0111 + 9257161-9257931                                           29   4.3  
03_05_0306 - 22956474-22956980                                         28   7.5  

>04_04_0214 - 23674270-23676858,23677574-23680843,23680941-23681119,
            23681200-23681559,23681645-23682086,23682199-23682332,
            23682479-23682680
          Length = 2391

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -2

Query: 332  KRGLWQHLTVGSGLARPLALLKSMGDVTTQH 240
            K+GL++ LT G+G+    +LL+   D+T  H
Sbjct: 1063 KKGLFRSLTTGTGMESKRSLLRQTVDLTISH 1093


>11_06_0179 + 20952070-20955228
          Length = 1052

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -3

Query: 403 HGPSGFGMSSPPRC-FPSXMTYPSSK 329
           H  +GFG SS P C  PS  +YP S+
Sbjct: 808 HDANGFGNSSEPSCPSPSIYSYPDSE 833


>10_05_0111 + 9257161-9257931
          Length = 256

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 19/74 (25%), Positives = 33/74 (44%)
 Frame = -2

Query: 374 PSTVFPERNDISFFKRGLWQHLTVGSGLARPLALLKSMGDVTTQHHVGRRIHKKTSVNCA 195
           P    PE + +    +  W  L +G   A+ LAL+  M  +  Q   G +I  +  + C 
Sbjct: 171 PEPALPEYSCLPPVYQDTWNSLPIGDEAAQALALMDRMLKLKEQGLQGEQI-TRHFIKCR 229

Query: 194 LIYIYRKSKSHSTL 153
           L  I  +S++ S +
Sbjct: 230 LAPIKERSRTASMI 243


>03_05_0306 - 22956474-22956980
          Length = 168

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +3

Query: 270 QQCQGPSQAAAYR*VLPQASFEEG-YVIXLGKHRGGELIPKPDGPWQKRSLXAHWG*TQW 446
           Q+  G  +  A R   P  SF  G  ++ L + +  E      G W +R+  A WG  +W
Sbjct: 23  QRLGGEPRRLARRPAFPPLSFRGGGLMLRLDEEKAQE-----HGAWSRRASPASWGEPRW 77

Query: 447 L 449
           L
Sbjct: 78  L 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,928,751
Number of Sequences: 37544
Number of extensions: 359321
Number of successful extensions: 794
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)