Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0238
(657 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30407| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_58989| Best HMM Match : RVT_1 (HMM E-Value=0) 38 0.005
SB_51257| Best HMM Match : Pox_F16 (HMM E-Value=4.1) 38 0.007
SB_49429| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.022
SB_31373| Best HMM Match : Put_DNA-bind_N (HMM E-Value=8.4) 36 0.022
SB_18046| Best HMM Match : RVT_1 (HMM E-Value=0.34) 36 0.022
SB_4935| Best HMM Match : Pox_F16 (HMM E-Value=5.3) 36 0.029
SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23) 36 0.029
SB_33076| Best HMM Match : Put_DNA-bind_N (HMM E-Value=8.4) 36 0.029
SB_14726| Best HMM Match : Ribosomal_L30 (HMM E-Value=6.6) 36 0.038
SB_48112| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.038
SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1) 35 0.067
SB_31120| Best HMM Match : Pox_F16 (HMM E-Value=5) 35 0.067
SB_51961| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.067
SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.067
SB_17278| Best HMM Match : RVT_1 (HMM E-Value=0.0082) 35 0.067
SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27) 35 0.067
SB_10927| Best HMM Match : RVT_1 (HMM E-Value=6.6e-39) 35 0.067
SB_40765| Best HMM Match : DX (HMM E-Value=1.4) 34 0.089
SB_43828| Best HMM Match : XPG_N (HMM E-Value=1.8) 34 0.12
SB_26135| Best HMM Match : RVT_1 (HMM E-Value=0.072) 34 0.12
SB_19117| Best HMM Match : XPG_N (HMM E-Value=1.8) 34 0.12
SB_54752| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.12
SB_43541| Best HMM Match : RVT_1 (HMM E-Value=0) 34 0.12
SB_38808| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.12
SB_20783| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.12
SB_20120| Best HMM Match : RVT_1 (HMM E-Value=0) 34 0.12
SB_25119| Best HMM Match : Ribosomal_S27 (HMM E-Value=9.4) 33 0.27
SB_40160| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.62
SB_16492| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.62
SB_22747| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-06) 31 1.1
SB_37654| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_14729| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_51588| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_42960| Best HMM Match : RVT_1 (HMM E-Value=2.38221e-44) 30 1.9
SB_7292| Best HMM Match : RVT_1 (HMM E-Value=0) 30 1.9
SB_48371| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_45340| Best HMM Match : RVT_1 (HMM E-Value=1.2e-15) 30 1.9
SB_39447| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_39270| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_25508| Best HMM Match : RVT_1 (HMM E-Value=6e-14) 30 1.9
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 29 2.5
SB_2407| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_33578| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076) 29 2.5
SB_59792| Best HMM Match : RVT_1 (HMM E-Value=4.2039e-45) 29 3.3
SB_42848| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_30049| Best HMM Match : FBA_2 (HMM E-Value=7) 29 3.3
SB_6030| Best HMM Match : rve (HMM E-Value=8.7e-30) 29 3.3
SB_51394| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_33045| Best HMM Match : RVT_1 (HMM E-Value=3.4e-18) 29 3.3
SB_26110| Best HMM Match : HipA_C (HMM E-Value=5.5) 29 3.3
SB_25497| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28) 29 3.3
SB_2897| Best HMM Match : RVT_1 (HMM E-Value=3e-33) 29 4.4
SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_51388| Best HMM Match : RVT_1 (HMM E-Value=0) 28 5.8
SB_31047| Best HMM Match : CHORD (HMM E-Value=6.2) 28 5.8
SB_27537| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_27335| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_17181| Best HMM Match : RVT_1 (HMM E-Value=0) 28 5.8
SB_39321| Best HMM Match : RVT_1 (HMM E-Value=4.5e-39) 28 5.8
SB_10962| Best HMM Match : PHD (HMM E-Value=5.3e-05) 28 5.8
SB_51798| Best HMM Match : DUF635 (HMM E-Value=1.6) 28 7.7
>SB_30407| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 788
Score = 40.7 bits (91), Expect = 0.001
Identities = 27/84 (32%), Positives = 39/84 (46%)
Frame = -2
Query: 473 SRVHPYYLEPLRSSPVRXQRSFLPRTIRLWNELPSTVFPERNDISFFKRGLWQHLTVGSG 294
SR + ++S+ + SF PRTIR WN LPS V E + I FK ++ ++ S
Sbjct: 544 SRTNSSKYNQIQSNVLSHSYSFFPRTIRTWNLLPSEVI-ESSSIDSFKSKVFPEGSIISV 602
Query: 293 LARPLALLKSMGDVTTQHHVGRRI 222
RP L +G + V I
Sbjct: 603 FRRPKNLKDILGPSKFKQRVATEI 626
>SB_58989| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 885
Score = 38.3 bits (85), Expect = 0.005
Identities = 20/51 (39%), Positives = 24/51 (47%)
Frame = -2
Query: 482 RYRSRVHPYYLEPLRSSPVRXQRSFLPRTIRLWNELPSTVFPERNDISFFK 330
R R HP PL +S SF RTI WN LP+ +F E + FK
Sbjct: 823 RKTRRSHPESFIPLSTSSASEHLSFFSRTIIQWNNLPALLFNEPCSLPIFK 873
>SB_51257| Best HMM Match : Pox_F16 (HMM E-Value=4.1)
Length = 243
Score = 37.9 bits (84), Expect = 0.007
Identities = 21/49 (42%), Positives = 27/49 (55%)
Frame = -2
Query: 476 RSRVHPYYLEPLRSSPVRXQRSFLPRTIRLWNELPSTVFPERNDISFFK 330
RSR + ++S+ + SF PRTIR WN LPS V E + I FK
Sbjct: 177 RSRTNSSKYNQIQSNVLSHSYSFFPRTIRTWNLLPSEVV-ESSSIDSFK 224
>SB_49429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 918
Score = 36.3 bits (80), Expect = 0.022
Identities = 20/48 (41%), Positives = 26/48 (54%)
Frame = -2
Query: 473 SRVHPYYLEPLRSSPVRXQRSFLPRTIRLWNELPSTVFPERNDISFFK 330
SR + ++S+ + SF PRTIR WN LPS V E + I FK
Sbjct: 853 SRTNSSKYNQIQSNVLSHSYSFFPRTIRTWNLLPSEVI-ESSSIDSFK 899
>SB_31373| Best HMM Match : Put_DNA-bind_N (HMM E-Value=8.4)
Length = 198
Score = 36.3 bits (80), Expect = 0.022
Identities = 20/48 (41%), Positives = 26/48 (54%)
Frame = -2
Query: 473 SRVHPYYLEPLRSSPVRXQRSFLPRTIRLWNELPSTVFPERNDISFFK 330
SR + ++S+ + SF PRTIR WN LPS V E + I FK
Sbjct: 133 SRTNSSKYNQIQSNVLSHSYSFFPRTIRTWNLLPSEVI-ESSSIDSFK 179
>SB_18046| Best HMM Match : RVT_1 (HMM E-Value=0.34)
Length = 837
Score = 36.3 bits (80), Expect = 0.022
Identities = 20/48 (41%), Positives = 26/48 (54%)
Frame = -2
Query: 473 SRVHPYYLEPLRSSPVRXQRSFLPRTIRLWNELPSTVFPERNDISFFK 330
SR + ++S+ + SF PRTIR WN LPS V E + I FK
Sbjct: 772 SRTNSSKYNQIQSNVLSHSYSFFPRTIRTWNLLPSEVI-ESSSIDSFK 818
>SB_4935| Best HMM Match : Pox_F16 (HMM E-Value=5.3)
Length = 243
Score = 35.9 bits (79), Expect = 0.029
Identities = 20/48 (41%), Positives = 26/48 (54%)
Frame = -2
Query: 473 SRVHPYYLEPLRSSPVRXQRSFLPRTIRLWNELPSTVFPERNDISFFK 330
SR + ++S+ + SF PRTIR WN LPS V E + I FK
Sbjct: 178 SRTNSSKYNQIQSNVLSHSYSFFPRTIRTWNLLPSEVV-ESSSIDSFK 224
>SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)
Length = 2386
Score = 35.9 bits (79), Expect = 0.029
Identities = 20/48 (41%), Positives = 26/48 (54%)
Frame = -2
Query: 473 SRVHPYYLEPLRSSPVRXQRSFLPRTIRLWNELPSTVFPERNDISFFK 330
SR + ++S+ + SF PRTIR WN LPS V E + I FK
Sbjct: 440 SRTNSSKYNQIQSNVLSHSYSFFPRTIRTWNLLPSEVV-ESSSIDSFK 486
>SB_33076| Best HMM Match : Put_DNA-bind_N (HMM E-Value=8.4)
Length = 152
Score = 35.9 bits (79), Expect = 0.029
Identities = 20/48 (41%), Positives = 26/48 (54%)
Frame = -2
Query: 473 SRVHPYYLEPLRSSPVRXQRSFLPRTIRLWNELPSTVFPERNDISFFK 330
SR + ++S+ + SF PRTIR WN LPS V E + I FK
Sbjct: 87 SRTNSSKYNQIQSNVLSHSYSFFPRTIRTWNLLPSEVV-ESSSIDSFK 133
>SB_14726| Best HMM Match : Ribosomal_L30 (HMM E-Value=6.6)
Length = 231
Score = 35.5 bits (78), Expect = 0.038
Identities = 16/31 (51%), Positives = 18/31 (58%)
Frame = -2
Query: 413 SFLPRTIRLWNELPSTVFPERNDISFFKRGL 321
SFLPR +RLWN LP +V R F GL
Sbjct: 201 SFLPRALRLWNNLPQSVIDMRGCPEAFHSGL 231
>SB_48112| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 232
Score = 35.5 bits (78), Expect = 0.038
Identities = 16/31 (51%), Positives = 18/31 (58%)
Frame = -2
Query: 413 SFLPRTIRLWNELPSTVFPERNDISFFKRGL 321
SFLPR +RLWN LP +V R F GL
Sbjct: 202 SFLPRALRLWNNLPQSVIDMRGCPEAFHAGL 232
>SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1)
Length = 2075
Score = 34.7 bits (76), Expect = 0.067
Identities = 20/51 (39%), Positives = 26/51 (50%)
Frame = -2
Query: 473 SRVHPYYLEPLRSSPVRXQRSFLPRTIRLWNELPSTVFPERNDISFFKRGL 321
SR H L+++ + SF PRTIR WN LP+ V D+ FK L
Sbjct: 1627 SRRHSRTYHQLQANILAFNYSFFPRTIRTWNLLPAEVV-NAADLPSFKSAL 1676
>SB_31120| Best HMM Match : Pox_F16 (HMM E-Value=5)
Length = 284
Score = 34.7 bits (76), Expect = 0.067
Identities = 19/48 (39%), Positives = 26/48 (54%)
Frame = -2
Query: 473 SRVHPYYLEPLRSSPVRXQRSFLPRTIRLWNELPSTVFPERNDISFFK 330
SR + ++S+ + SF PRTIR WN LP+ V E + I FK
Sbjct: 219 SRTNSSKYNQIQSNVLSHSYSFFPRTIRTWNLLPAQVV-ESSSIDSFK 265
>SB_51961| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 193
Score = 34.7 bits (76), Expect = 0.067
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -2
Query: 479 YR-SRVHPYYLEPLRSSPVRXQRSFLPRTIRLWNELPSTV 363
YR +R H + L+S+ + SF PR IR+WN LPS V
Sbjct: 119 YRVTRRHNHSFLQLQSNILSYNYSFFPRAIRIWNLLPSNV 158
>SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3142
Score = 34.7 bits (76), Expect = 0.067
Identities = 20/51 (39%), Positives = 26/51 (50%)
Frame = -2
Query: 473 SRVHPYYLEPLRSSPVRXQRSFLPRTIRLWNELPSTVFPERNDISFFKRGL 321
SR H L+++ + SF PRTIR WN LP+ V D+ FK L
Sbjct: 1073 SRRHSRTYHQLQANILAFNYSFFPRTIRTWNLLPAEVV-NAADLPSFKSAL 1122
>SB_17278| Best HMM Match : RVT_1 (HMM E-Value=0.0082)
Length = 506
Score = 34.7 bits (76), Expect = 0.067
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -2
Query: 479 YR-SRVHPYYLEPLRSSPVRXQRSFLPRTIRLWNELPSTV 363
YR +R H + L+S+ + SF PR IR+WN LPS V
Sbjct: 438 YRVTRRHNHSFLQLQSNILSYNYSFFPRAIRIWNLLPSNV 477
>SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27)
Length = 1492
Score = 34.7 bits (76), Expect = 0.067
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -2
Query: 479 YR-SRVHPYYLEPLRSSPVRXQRSFLPRTIRLWNELPSTV 363
YR +R H + L+S+ + SF PR IR+WN LPS V
Sbjct: 1424 YRVTRRHNHSFLQLQSNILSYNYSFFPRAIRIWNLLPSNV 1463
>SB_10927| Best HMM Match : RVT_1 (HMM E-Value=6.6e-39)
Length = 452
Score = 34.7 bits (76), Expect = 0.067
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -2
Query: 479 YR-SRVHPYYLEPLRSSPVRXQRSFLPRTIRLWNELPSTV 363
YR +R H + L+S+ + SF PR IR+WN LPS V
Sbjct: 384 YRVTRRHNHSFLQLQSNILSYNYSFFPRAIRIWNLLPSNV 423
>SB_40765| Best HMM Match : DX (HMM E-Value=1.4)
Length = 278
Score = 34.3 bits (75), Expect = 0.089
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = -2
Query: 413 SFLPRTIRLWNELPSTVFPERNDISFFKRGL 321
SF PRTIR WN LP+ + E + I FKR L
Sbjct: 240 SFFPRTIRHWNTLPNELV-ELDSIEHFKRDL 269
>SB_43828| Best HMM Match : XPG_N (HMM E-Value=1.8)
Length = 174
Score = 33.9 bits (74), Expect = 0.12
Identities = 17/31 (54%), Positives = 19/31 (61%)
Frame = -2
Query: 413 SFLPRTIRLWNELPSTVFPERNDISFFKRGL 321
SF PRTIR WN LP+ + E I FKR L
Sbjct: 136 SFFPRTIRHWNTLPNELV-ELGSIEHFKRDL 165
>SB_26135| Best HMM Match : RVT_1 (HMM E-Value=0.072)
Length = 375
Score = 33.9 bits (74), Expect = 0.12
Identities = 17/31 (54%), Positives = 19/31 (61%)
Frame = -2
Query: 413 SFLPRTIRLWNELPSTVFPERNDISFFKRGL 321
SF PRTIR WN LP+ + E I FKR L
Sbjct: 337 SFFPRTIRHWNTLPNELV-ELGSIEHFKRDL 366
>SB_19117| Best HMM Match : XPG_N (HMM E-Value=1.8)
Length = 361
Score = 33.9 bits (74), Expect = 0.12
Identities = 17/31 (54%), Positives = 19/31 (61%)
Frame = -2
Query: 413 SFLPRTIRLWNELPSTVFPERNDISFFKRGL 321
SF PRTIR WN LP+ + E I FKR L
Sbjct: 323 SFFPRTIRHWNTLPNELV-ELGSIEHFKRDL 352
>SB_54752| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 792
Score = 33.9 bits (74), Expect = 0.12
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = -2
Query: 500 LFXCTARYRSR-VHPYYLEPLRSSPVRXQR-SFLPRTIRLWNELPSTVFPERNDISFFKR 327
L T+RY +R HP + R S+ PRT++LWN LPS + +S F+
Sbjct: 718 LSPATSRYNTRSYHPNNYRLFSTHNQNYYRNSYFPRTVKLWNSLPS-LMKSCTTLSSFRY 776
Query: 326 GLWQH 312
L H
Sbjct: 777 QLTTH 781
>SB_43541| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 581
Score = 33.9 bits (74), Expect = 0.12
Identities = 17/31 (54%), Positives = 19/31 (61%)
Frame = -2
Query: 413 SFLPRTIRLWNELPSTVFPERNDISFFKRGL 321
SF PRTIR WN LP+ + E I FKR L
Sbjct: 543 SFFPRTIRHWNTLPNELV-ELGSIEHFKRDL 572
>SB_38808| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 824
Score = 33.9 bits (74), Expect = 0.12
Identities = 17/31 (54%), Positives = 19/31 (61%)
Frame = -2
Query: 413 SFLPRTIRLWNELPSTVFPERNDISFFKRGL 321
SF PRTIR WN LP+ + E I FKR L
Sbjct: 786 SFFPRTIRHWNTLPNELV-ELGSIEHFKRDL 815
>SB_20783| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 295
Score = 33.9 bits (74), Expect = 0.12
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = -2
Query: 500 LFXCTARYRSR-VHPYYLEPLRSSPVRXQR-SFLPRTIRLWNELPSTVFPERNDISFFKR 327
L T+RY +R HP + R S+ PRT++LWN LPS + +S F+
Sbjct: 221 LSPATSRYNTRSYHPNNYRLFSTHNQNYYRNSYFPRTVKLWNSLPS-LMKSCTTLSSFRY 279
Query: 326 GLWQH 312
L H
Sbjct: 280 QLTTH 284
>SB_20120| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 666
Score = 33.9 bits (74), Expect = 0.12
Identities = 17/31 (54%), Positives = 19/31 (61%)
Frame = -2
Query: 413 SFLPRTIRLWNELPSTVFPERNDISFFKRGL 321
SF PRTIR WN LP+ + E I FKR L
Sbjct: 628 SFFPRTIRHWNTLPNELV-ELGSIEHFKRDL 657
>SB_25119| Best HMM Match : Ribosomal_S27 (HMM E-Value=9.4)
Length = 443
Score = 32.7 bits (71), Expect = 0.27
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = -2
Query: 473 SRVHPYYLEPLRSSPVRXQRSFLPRTIRLWNELPSTVFPERNDISF 336
+R H + L S+ + SF PR IR WN LP + N SF
Sbjct: 262 TRRHSLSFQQLHSNILSFNYSFFPRAIRAWNLLPDNIVNLSNLESF 307
>SB_40160| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 302
Score = 31.5 bits (68), Expect = 0.62
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
Frame = -2
Query: 524 LGKCXLVXLFXCTARYRSRVHPYYLEPLRSSP-VRXQRSFLPRTIRLWNELPSTVFPERN 348
LG C + C+ V Y L+PLRS P V ++ FL + + + P+
Sbjct: 76 LGDCPAIDFESCSYHDCMDVLRYQLKPLRSMPAVILEQEFLDHMVDSIKPIKTPSIPDNE 135
Query: 347 DISFFKR-GLWQHLTVGSGLARPLALLKSMG 258
DIS R L H V + + R L++ G
Sbjct: 136 DISTQPRVFLSYHWDVQTKVQRLAHFLENQG 166
>SB_16492| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 295
Score = 31.5 bits (68), Expect = 0.62
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -2
Query: 419 QRSFLPRTIRLWNELPSTVFPERNDISFFKRGLWQH 312
+ S+ PRT++LWN LPS + +S F+ L H
Sbjct: 250 RNSYFPRTVKLWNSLPS-LMKSCTTLSSFRYQLTTH 284
>SB_22747| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-06)
Length = 337
Score = 30.7 bits (66), Expect = 1.1
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
Frame = -2
Query: 392 RLWNELPSTVFPE-RNDISFFKRGLWQHLTVGSGLA-RPLALLKSMGDVTTQH--HVGRR 225
RL NE+P T FP+ R + + +TV L+ P A+L + VT + HV
Sbjct: 204 RLRNEIP-TAFPQGRRRMYTTLSRMMVGVTVAFTLSWSPYAILSVISMVTGRPIIHVVPS 262
Query: 224 IHKKTSVNCA-LIYIYRKSKSHSTLNSFFLLLTRT 123
+ K+SV ++YI S +N+ + LLTRT
Sbjct: 263 LMAKSSVMYTPIVYIAFSRSFRSAVNALYSLLTRT 297
>SB_37654| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 865
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -2
Query: 413 SFLPRTIRLWNELPSTVFP 357
SF RTI +WN LP VFP
Sbjct: 829 SFYSRTIPVWNALPQAVFP 847
>SB_14729| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 315
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/57 (33%), Positives = 28/57 (49%)
Frame = -2
Query: 533 VIYLGKCXLVXLFXCTARYRSRVHPYYLEPLRSSPVRXQRSFLPRTIRLWNELPSTV 363
+I L L L + R R YY + L+++ + SF R IR+WN LP+ V
Sbjct: 231 IIVLYMLNLPDLVTRSTRSTRRKELYYNQ-LQANTLAFNYSFFARAIRIWNLLPNDV 286
>SB_51588| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 231
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -2
Query: 413 SFLPRTIRLWNELPSTVFPERNDISFFKRGLWQHL 309
SF P +I +WN LP ++ + + FK L QHL
Sbjct: 191 SFFPWSINIWNNLPGSI-TDIKEKGKFKEKLQQHL 224
>SB_42960| Best HMM Match : RVT_1 (HMM E-Value=2.38221e-44)
Length = 455
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -2
Query: 413 SFLPRTIRLWNELPSTVFPERNDISFFKRGLWQHL 309
SF P +I+ WN LP ++ + + FK L QHL
Sbjct: 415 SFFPWSIKFWNNLPGSI-TDIKEKGKFKEKLQQHL 448
>SB_7292| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1126
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -2
Query: 413 SFLPRTIRLWNELPSTVFPERNDISFFKRGLWQHL 309
SF P +I+ WN LP ++ + + FK L QHL
Sbjct: 1086 SFFPWSIKFWNNLPGSI-TDIKEKGKFKEKLQQHL 1119
>SB_48371| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 811
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -2
Query: 413 SFLPRTIRLWNELPSTVFPERNDISFFKRGLWQHL 309
SF P +I+ WN LP ++ + + FK L QHL
Sbjct: 387 SFFPWSIKFWNNLPGSI-TDIKEKGKFKEKLQQHL 420
>SB_45340| Best HMM Match : RVT_1 (HMM E-Value=1.2e-15)
Length = 447
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -2
Query: 413 SFLPRTIRLWNELPSTVFPERNDISFFKRGLWQHL 309
SF P +I+ WN LP ++ + + FK L QHL
Sbjct: 407 SFFPWSIKFWNNLPGSI-TDIKEKGKFKEKLQQHL 440
>SB_39447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2123
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -2
Query: 413 SFLPRTIRLWNELPSTVFPERNDISFFKRGLWQHL 309
SF P +I+ WN LP ++ + + FK L QHL
Sbjct: 2083 SFFPWSIKFWNNLPGSI-TDIKEKGKFKEKLQQHL 2116
>SB_39270| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 278
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -2
Query: 413 SFLPRTIRLWNELPSTVFPERNDISFFKRGLWQHL 309
SF P +I+ WN LP ++ + + FK L QHL
Sbjct: 238 SFFPWSIKFWNNLPGSI-TDIKEKGKFKEKLQQHL 271
>SB_25508| Best HMM Match : RVT_1 (HMM E-Value=6e-14)
Length = 832
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -2
Query: 413 SFLPRTIRLWNELPSTVFPERNDISFFKRGLWQHL 309
SF P +I+ WN LP ++ + + FK L QHL
Sbjct: 792 SFFPWSIKFWNNLPGSI-TDIKEKGKFKEKLQQHL 825
>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 3891
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -3
Query: 442 CVHPQCASRDLFCHGPSGFGMSSPPRCFPSXMTYPSSKEACGS 314
C +C SRD C G + G SS + +T P+ + C +
Sbjct: 3053 CPSGRCISRDWLCDGDNDCGDSSDEKAGECHVTCPAGQARCAT 3095
>SB_2407| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 234
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -2
Query: 413 SFLPRTIRLWNELPSTVFPERNDISFFKRGLWQHL 309
SF P +I+ WN LP+ + + + FK L QHL
Sbjct: 194 SFFPWSIKFWNNLPAPI-TDIKEKGKFKEKLQQHL 227
>SB_33578| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076)
Length = 888
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = -2
Query: 413 SFLPRTIRLWNELPSTV 363
SF+PR IRLWN L TV
Sbjct: 747 SFVPRAIRLWNSLEVTV 763
>SB_59792| Best HMM Match : RVT_1 (HMM E-Value=4.2039e-45)
Length = 565
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -2
Query: 413 SFLPRTIRLWNELPSTVFPERNDISFFKRGLWQHL 309
SF P +I WN LP ++ + + FK L QHL
Sbjct: 525 SFFPWSINFWNNLPGSI-TDIKEKGKFKEKLQQHL 558
>SB_42848| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 231
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/76 (26%), Positives = 32/76 (42%)
Frame = -2
Query: 437 SSPVRXQRSFLPRTIRLWNELPSTVFPERNDISFFKRGLWQHLTVGSGLARPLALLKSMG 258
S + RS +P I+ W E +TV R + G + + + RP+ L +
Sbjct: 28 SKALNIPRSTVPPIIQKWKEYGTTVNLPRQGRPPKRTGRTRRALIRNAAKRPMVTLGELQ 87
Query: 257 DVTTQHHVGRRIHKKT 210
T Q VG +H+ T
Sbjct: 88 RSTAQ--VGESVHRTT 101
>SB_30049| Best HMM Match : FBA_2 (HMM E-Value=7)
Length = 282
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -2
Query: 443 LRSSPVRXQRSFLPRTIRLWNELPSTV 363
L+S+ + SF R IR+WN LPS V
Sbjct: 227 LQSNILSYNYSFFARAIRIWNLLPSNV 253
>SB_6030| Best HMM Match : rve (HMM E-Value=8.7e-30)
Length = 1280
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 455 YLEPLRSSPVRXQRSFLPRTIRLWNELPSTV 363
Y L+++ + SF R IR+WN LP+ V
Sbjct: 1221 YCNQLQANTLTFNYSFFARAIRIWNLLPNDV 1251
>SB_51394| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 106
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -2
Query: 413 SFLPRTIRLWNELPSTVFPERNDISFFKRGLWQHL 309
SF P +I WN LP ++ + + FK L QHL
Sbjct: 66 SFFPWSINFWNNLPGSI-TDIKEKGKFKEKLQQHL 99
>SB_33045| Best HMM Match : RVT_1 (HMM E-Value=3.4e-18)
Length = 1061
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -2
Query: 413 SFLPRTIRLWNELPSTVFPERNDISFFKRGLWQHL 309
SF P +I WN LP ++ + + FK L QHL
Sbjct: 1021 SFFPWSINFWNNLPGSI-TDIKEKGKFKEKLQQHL 1054
>SB_26110| Best HMM Match : HipA_C (HMM E-Value=5.5)
Length = 210
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 455 YLEPLRSSPVRXQRSFLPRTIRLWNELPSTV 363
Y L+++ + SF R IR+WN LP+ V
Sbjct: 151 YYNQLQANTLAFNYSFFARAIRIWNLLPNDV 181
>SB_25497| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 372
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 455 YLEPLRSSPVRXQRSFLPRTIRLWNELPSTV 363
Y L+++ + SF R IR+WN LP+ V
Sbjct: 305 YYNQLQANTLAFNYSFFARAIRIWNLLPNDV 335
>SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28)
Length = 570
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 455 YLEPLRSSPVRXQRSFLPRTIRLWNELPSTV 363
Y L+++ + SF R IR+WN LP+ V
Sbjct: 511 YYNQLQANTLAFNYSFFARAIRIWNLLPNDV 541
>SB_2897| Best HMM Match : RVT_1 (HMM E-Value=3e-33)
Length = 609
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -2
Query: 413 SFLPRTIRLWNELPS 369
SF PRTIR WN LP+
Sbjct: 569 SFFPRTIRHWNTLPN 583
>SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1315
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 457 TTWSHCVHPQCASRDLFCHG 398
+T CV+ QC SRDL C G
Sbjct: 1121 STQFQCVNGQCVSRDLICDG 1140
>SB_51388| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 670
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -2
Query: 413 SFLPRTIRLWNELPSTVFPERNDISFFKRGLWQHL 309
SF P +I WN LP ++ + FK L QHL
Sbjct: 525 SFFPWSINFWNNLPGSI-TNIKEKGKFKEKLQQHL 558
>SB_31047| Best HMM Match : CHORD (HMM E-Value=6.2)
Length = 251
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 455 YLEPLRSSPVRXQRSFLPRTIRLWNELP 372
Y P S+ ++SF P TIR WN LP
Sbjct: 203 YKVPPSSTDYHKKKSFFPPTIRDWNCLP 230
>SB_27537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 396
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -2
Query: 413 SFLPRTIRLWNELPSTVFPERNDISFFKRGLWQHL 309
SF P +I WN LP ++ + FK L QHL
Sbjct: 356 SFFPWSINFWNNLPGSI-TNIKEKGKFKEKLQQHL 389
>SB_27335| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 278
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -2
Query: 413 SFLPRTIRLWNELPSTVFPERNDISFFKRGLWQHL 309
SF P +I WN LP ++ + FK L QHL
Sbjct: 238 SFFPWSINFWNNLPGSI-TNIKEKGKFKEKLQQHL 271
>SB_17181| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 668
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -2
Query: 413 SFLPRTIRLWNELPSTVFPERNDISFFKRGLWQHL 309
SF P +I WN LP ++ + FK L QHL
Sbjct: 628 SFFPWSINFWNNLPGSI-TNIKEKGKFKEKLQQHL 661
>SB_39321| Best HMM Match : RVT_1 (HMM E-Value=4.5e-39)
Length = 900
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -2
Query: 413 SFLPRTIRLWNELPSTVFPERNDISFFKRGLWQHL 309
SF P +I WN LP ++ + FK L QHL
Sbjct: 860 SFFPWSINFWNNLPGSI-TNIKEKGKFKEKLQQHL 893
>SB_10962| Best HMM Match : PHD (HMM E-Value=5.3e-05)
Length = 521
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -2
Query: 413 SFLPRTIRLWNELPSTVFPERNDISFFKRGLWQHL 309
SF P +I WN LP ++ + FK L QHL
Sbjct: 481 SFFPWSINFWNNLPGSI-TNIKEKGKFKEKLQQHL 514
>SB_51798| Best HMM Match : DUF635 (HMM E-Value=1.6)
Length = 372
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/50 (26%), Positives = 29/50 (58%)
Frame = +1
Query: 262 MDFSNAKGRAKPLPTVKCCHKPLLKKDMSXRSGNTVEGSSFQSRMVRGKK 411
++ ++ KG+ K + ++CC + L+KD++ +G ++ S Q + KK
Sbjct: 77 VEATHIKGKEKVIQLLECCDEQ-LRKDLTRNAGGSLTSKSPQEVLEAIKK 125
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,159,397
Number of Sequences: 59808
Number of extensions: 389574
Number of successful extensions: 858
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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