Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0238
         (657 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    28   0.090
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    28   0.090
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    24   1.5  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    24   1.5  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   3.4  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    22   4.5  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    22   4.5  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    22   4.5  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    22   4.5  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    22   4.5  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    21   7.8  

>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 27.9 bits (59), Expect = 0.090
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +3

Query: 12  FTLTLFTYNISRRCCWLRFNWFG*LLHFYIKV*LKISGSRQK*KKTV 152
           F  T+FTYNI+     L+  + G LL  + K  L +    QK K+ +
Sbjct: 205 FDATVFTYNITNSTPLLKKLYGGPLLRIFTKHMLDVVSGTQKKKRKI 251


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 27.9 bits (59), Expect = 0.090
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +3

Query: 12  FTLTLFTYNISRRCCWLRFNWFG*LLHFYIKV*LKISGSRQK*KKTV 152
           F  T+FTYNI+     L+  + G LL  + K  L +    QK K+ +
Sbjct: 220 FDATVFTYNITNSTPLLKKLYGGPLLRIFTKHMLDVVSGTQKKKRKI 266


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -2

Query: 203 NCALIYIYRKSKSHSTLNSFFLL 135
           NC +I+I+  SKS  T ++ F++
Sbjct: 75  NCCVIWIFSTSKSLRTPSNMFIV 97


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -2

Query: 203 NCALIYIYRKSKSHSTLNSFFLL 135
           NC +I+I+  SKS  T ++ F++
Sbjct: 75  NCCVIWIFSTSKSLRTPSNMFIV 97


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -2

Query: 203 NCALIYIYRKSKSHSTLNSFFLLLTRTTNFQSYF 102
           N  ++YI+  +KS  T ++ F++    +NF   F
Sbjct: 70  NGMVVYIFLSTKSLRTPSNLFVINLAISNFLMMF 103


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +3

Query: 372 GELIPKPDGPW 404
           G  +P+P GPW
Sbjct: 124 GNFLPRPMGPW 134


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +3

Query: 372 GELIPKPDGPW 404
           G  +P+P GPW
Sbjct: 127 GNFLPRPMGPW 137


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +3

Query: 372 GELIPKPDGPW 404
           G  +P+P GPW
Sbjct: 127 GNFLPRPMGPW 137


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +3

Query: 372 GELIPKPDGPW 404
           G  +P+P GPW
Sbjct: 127 GNFLPRPMGPW 137


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +3

Query: 372 GELIPKPDGPW 404
           G  +P+P GPW
Sbjct: 127 GNFLPRPMGPW 137


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 330 FEEGYVIXLGKHRGGEL 380
           +E  YV+ LG+ RG +L
Sbjct: 113 YEGHYVLPLGRKRGAKL 129


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,269
Number of Sequences: 438
Number of extensions: 3962
Number of successful extensions: 14
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)