Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0238
         (657 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g53090.1 68416.m05851 HECT-domain-containing protein / ubiqui...    29   2.1  
At5g13570.1 68418.m01568 MutT/nudix family protein similar to mR...    28   4.8  
At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical t...    28   6.3  
At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical t...    28   6.3  

>At3g53090.1 68416.m05851 HECT-domain-containing protein /
           ubiquitin-transferase family protein / IQ
           calmodulin-binding motif-containing protein contains
           Pfam profiles PF00632: HECT-domain
           (ubiquitin-transferase), PF00612: IQ calmodulin-binding
           motif
          Length = 1142

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = -2

Query: 524 LGKCXLVXLFXCTARYRSRVHPYYLEPLRSSPVRXQRSFLPRTI-RLWNELPSTVFPE 354
           LG   +  L+ C  R    ++P  L PL   PV    SF P  I  LWN L S + PE
Sbjct: 465 LGLLDIARLYSCMLRIFCVMNPV-LGPL---PVLNMLSFCPGYIVSLWNSLESVLLPE 518


>At5g13570.1 68418.m01568 MutT/nudix family protein similar to
           mRNA-decapping enzyme [Homo sapiens] GI:23268269;
           contains Pfam profile PF00293: NUDIX domain
          Length = 373

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -3

Query: 484 PATXVEFIHTTWSHCVHPQCASRDLFCHGPSG 389
           P T  E    TW    H Q AS ++  HG SG
Sbjct: 198 PLTKKEISEITWHRLDHLQPASNEVITHGVSG 229


>At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical to
           protodermal factor 1 [Arabidopsis thaliana]
           gi|4929130|gb|AAD33869
          Length = 306

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = -3

Query: 436 HPQCASRDLFCHGPSGFGMSSPPRCFPSXMTYPS 335
           HP   S     H PSG   SSPP   P  +T PS
Sbjct: 119 HPSTPSHPTPSHPPSGGYYSSPPPRTPVVVTPPS 152


>At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical to
           protodermal factor 1 [Arabidopsis thaliana]
           gi|4929130|gb|AAD33869
          Length = 306

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = -3

Query: 436 HPQCASRDLFCHGPSGFGMSSPPRCFPSXMTYPS 335
           HP   S     H PSG   SSPP   P  +T PS
Sbjct: 119 HPSTPSHPTPSHPPSGGYYSSPPPRTPVVVTPPS 152


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,307,502
Number of Sequences: 28952
Number of extensions: 269131
Number of successful extensions: 564
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)