Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0235
         (657 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0773 + 31654985-31655365,31655486-31655610,31655712-316560...    28   5.7  
05_07_0354 - 29507068-29507170,29507406-29507431,29508264-295083...    28   7.5  
10_01_0131 - 1541964-1542161,1542235-1542390,1543046-1543923,154...    27   9.9  
04_04_0724 + 27578337-27578371,27578492-27578607,27578717-275788...    27   9.9  

>02_05_0773 +
           31654985-31655365,31655486-31655610,31655712-31656026,
           31656145-31656314,31656408-31656751
          Length = 444

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 202 KLNVIRANKQCGSVQNLHHIHSKY*ANGGP 113
           +L+V RA  + G V+N+    S+Y  +GGP
Sbjct: 241 RLHVARAMVEAGYVENIRQAFSRYLYDGGP 270


>05_07_0354 -
           29507068-29507170,29507406-29507431,29508264-29508301,
           29508722-29508825,29509005-29509024,29509251-29509299,
           29510319-29510406,29510463-29510562,29510660-29510737,
           29512688-29512804,29513718-29513821,29514497-29514569,
           29514904-29514981,29515091-29515215,29515278-29515341,
           29515439-29515597,29515950-29516048,29516496-29516624,
           29517010-29517075,29517160-29517304,29517379-29517500,
           29517683-29517838,29517918-29518029,29518891-29519036,
           29519148-29519252,29519391-29519540,29519703-29519776,
           29519902-29520055,29520142-29520408
          Length = 1016

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -1

Query: 165 VYKIYITFTRNIKQMAVRADDATEPAE*CTTSHSSVHSLN 46
           V KI  TF+RN ++MAV  + + +    CT   +  H L+
Sbjct: 852 VSKINSTFSRNFQEMAVAGEVSLDGIPICTKFPADEHGLD 891


>10_01_0131 -
           1541964-1542161,1542235-1542390,1543046-1543923,
           1544060-1544135,1544162-1544191
          Length = 445

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +3

Query: 411 MNDISKSVSLKVLGLCTIVSSNKKKYHHASFILPSITNLTIYHTD 545
           ++D   S +LK L    I +S   + + AS   PS+T+LT+Y  D
Sbjct: 241 LDDEISSTTLKTLN---IYASRFSEDYRASISTPSLTSLTLYKPD 282


>04_04_0724 +
           27578337-27578371,27578492-27578607,27578717-27578875,
           27578954-27579129,27580406-27580683,27580759-27580894,
           27580984-27581095,27581177-27581268
          Length = 367

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 274 RDQTSRLHEHAAPRLRVLPSSSLTKLNVI 188
           + Q S LH+HAAP  +VL  ++    N +
Sbjct: 147 KSQASALHQHAAPNCKVLVVANPANTNAL 175


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,073,763
Number of Sequences: 37544
Number of extensions: 276403
Number of successful extensions: 647
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)