Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0235
         (657 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC004493-2|AAC08453.1| 1791|Homo sapiens KIAA0324 protein.             33   1.2  
AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein pro...    33   1.2  
AB016091-1|BAA83717.1| 1275|Homo sapiens RNA binding protein pro...    33   1.2  
AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.     33   1.2  

>AC004493-2|AAC08453.1| 1791|Homo sapiens KIAA0324 protein.
          Length = 1791

 Score = 32.7 bits (71), Expect = 1.2
 Identities = 25/94 (26%), Positives = 42/94 (44%)
 Frame = -2

Query: 341  SRTIVPHTRTRYPQMIQKKLTHQRSNISAA*TRRATLAGPSLVESYKTKRDSSE*TMRQC 162
            SR+  P TR R           +  + +   TRR + +  S +   +++  +S  T R+ 
Sbjct: 967  SRSRTPTTRRRSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSPITRRRSRSRTSPVTRRRS 1026

Query: 161  TKFTSHSLEILSKWRSARTTRRSQQNDAPPHIRR 60
               TS      S+ R++  TRR  ++  PP IRR
Sbjct: 1027 RSRTSPVTRRRSRSRTSPVTRRRSRSRTPPAIRR 1060


>AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein protein.
          Length = 2752

 Score = 32.7 bits (71), Expect = 1.2
 Identities = 25/94 (26%), Positives = 42/94 (44%)
 Frame = -2

Query: 341  SRTIVPHTRTRYPQMIQKKLTHQRSNISAA*TRRATLAGPSLVESYKTKRDSSE*TMRQC 162
            SR+  P TR R           +  + +   TRR + +  S +   +++  +S  T R+ 
Sbjct: 1935 SRSRTPTTRRRSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSPITRRRSRSRTSPVTRRRS 1994

Query: 161  TKFTSHSLEILSKWRSARTTRRSQQNDAPPHIRR 60
               TS      S+ R++  TRR  ++  PP IRR
Sbjct: 1995 RSRTSPVTRRRSRSRTSPVTRRRSRSRTPPAIRR 2028


>AB016091-1|BAA83717.1| 1275|Homo sapiens RNA binding protein
           protein.
          Length = 1275

 Score = 32.7 bits (71), Expect = 1.2
 Identities = 25/94 (26%), Positives = 42/94 (44%)
 Frame = -2

Query: 341 SRTIVPHTRTRYPQMIQKKLTHQRSNISAA*TRRATLAGPSLVESYKTKRDSSE*TMRQC 162
           SR+  P TR R           +  + +   TRR + +  S +   +++  +S  T R+ 
Sbjct: 458 SRSRTPTTRRRSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSPITRRRSRSRTSPVTRRRS 517

Query: 161 TKFTSHSLEILSKWRSARTTRRSQQNDAPPHIRR 60
              TS      S+ R++  TRR  ++  PP IRR
Sbjct: 518 RSRTSPVTRRRSRSRTSPVTRRRSRSRTPPAIRR 551


>AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.
          Length = 2800

 Score = 32.7 bits (71), Expect = 1.2
 Identities = 25/94 (26%), Positives = 42/94 (44%)
 Frame = -2

Query: 341  SRTIVPHTRTRYPQMIQKKLTHQRSNISAA*TRRATLAGPSLVESYKTKRDSSE*TMRQC 162
            SR+  P TR R           +  + +   TRR + +  S +   +++  +S  T R+ 
Sbjct: 1983 SRSRTPTTRRRSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSPITRRRSRSRTSPVTRRRS 2042

Query: 161  TKFTSHSLEILSKWRSARTTRRSQQNDAPPHIRR 60
               TS      S+ R++  TRR  ++  PP IRR
Sbjct: 2043 RSRTSPVTRRRSRSRTSPVTRRRSRSRTPPAIRR 2076


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,708,510
Number of Sequences: 237096
Number of extensions: 1412642
Number of successful extensions: 6188
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6188
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7366354010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)