Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0235
         (657 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF160975-1|AAF05113.1|  784|Drosophila melanogaster Liquid facet...    28   9.7  
AE014296-1284|AAN12042.2|  784|Drosophila melanogaster CG8532-PC...    28   9.7  

>AF160975-1|AAF05113.1|  784|Drosophila melanogaster Liquid facets
           protein.
          Length = 784

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -1

Query: 360 SNTSRVQPN---YRTAYPNSISSDDSKKTNASEIKHLGCMNTPRHACGSFP 217
           S TS+ QPN   Y  AY +S S++   K+N     +    N+  H+C + P
Sbjct: 617 STTSQPQPNLQVYNNAYQSSSSTNILGKSNIPTNMNSSTSNSTIHSCYASP 667


>AE014296-1284|AAN12042.2|  784|Drosophila melanogaster CG8532-PC,
           isoform C protein.
          Length = 784

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -1

Query: 360 SNTSRVQPN---YRTAYPNSISSDDSKKTNASEIKHLGCMNTPRHACGSFP 217
           S TS+ QPN   Y  AY +S S++   K+N     +    N+  H+C + P
Sbjct: 617 STTSQPQPNLQVYNNAYQSSSSTNILGKSNIPTNMNSSTSNSTIHSCYASP 667


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,476,666
Number of Sequences: 53049
Number of extensions: 466547
Number of successful extensions: 1142
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1142
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2806815600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)