Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0235
         (657 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038605-2|AAB92020.1|  698|Caenorhabditis elegans Hypothetical ...    29   2.9  
AC199240-1|ABO33278.1|  427|Caenorhabditis elegans Hypothetical ...    27   8.9  

>AF038605-2|AAB92020.1|  698|Caenorhabditis elegans Hypothetical
           protein C02B10.5 protein.
          Length = 698

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = -2

Query: 230 AGPSLVESYKTKRDSSE*TMRQCTK-FTSHSLEILSKWRSARTTRRSQQNDAPPHIRR 60
           A PSLV+S   K + ++   R  T   TS  ++  S     R+   SQ+  +PP +RR
Sbjct: 29  ASPSLVKSEVVKEEENDDADRTLTMPSTSQDIQPESSPAHGRSAPSSQEITSPPTVRR 86


>AC199240-1|ABO33278.1|  427|Caenorhabditis elegans Hypothetical
           protein 2L52.1 protein.
          Length = 427

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = -2

Query: 341 SRTIVPHTRTRYPQMIQKKLTHQRSN 264
           S ++VP  R  +P+ ++K+L+ QR+N
Sbjct: 229 SASMVPSKRRNWPKRVKKRLSTQRNN 254


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,124,116
Number of Sequences: 27780
Number of extensions: 242623
Number of successful extensions: 572
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)