Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0230
         (660 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    23   1.7  
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    22   3.9  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         22   3.9  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    22   5.1  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   5.1  

>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 476 TRLEPRRSAIKNRAWSVLLLEV 541
           TRL PR +A   R WS   L+V
Sbjct: 566 TRLWPRAAAFAERVWSDPQLDV 587


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 441 HNPDAKPSRVKLPVWSQEGLP 503
           +NP   P RV +PV  ++G P
Sbjct: 110 NNPLPSPRRVAVPVLVRDGKP 130


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 318 VGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFA 428
           VG  +      EG     L E +GD G+L  AS +FA
Sbjct: 91  VGTALTFCLQEEGGTTSQLIELLGDAGKLL-ASVHFA 126


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 467 SKATRLEPRRSAIKNRAWS 523
           S  TR+ PR +A   R WS
Sbjct: 521 SLETRIWPRSAAFAERIWS 539


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = -1

Query: 636  SGFMAXHDICHS 601
            +GF+A ++ICH+
Sbjct: 1674 AGFLAYYEICHN 1685



 Score = 21.4 bits (43), Expect = 6.8
 Identities = 5/11 (45%), Positives = 7/11 (63%)
 Frame = +2

Query: 416  WKLRHCDWTQS 448
            W   HCDW ++
Sbjct: 2271 WNKDHCDWPEN 2281


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,727
Number of Sequences: 336
Number of extensions: 3588
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17073220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)