Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0230
         (660 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0812 + 23383704-23384143,23384902-23385247                      121   6e-28
02_05_0058 + 25478274-25478421,25478963-25479142,25479714-254800...    31   1.1  
06_01_0026 + 265755-265968,267319-267468,267694-267738,267786-26...    29   2.5  
01_07_0112 - 41149461-41151674,41151688-41153265,41154344-411555...    29   4.3  
03_05_0874 - 28429982-28430083,28430284-28430472,28430585-284306...    28   5.7  
06_03_1366 + 29601921-29602646                                         28   7.6  

>12_02_0812 + 23383704-23384143,23384902-23385247
          Length = 261

 Score =  121 bits (291), Expect = 6e-28
 Identities = 59/123 (47%), Positives = 84/123 (68%), Gaps = 2/123 (1%)
 Frame = +3

Query: 210 TLPRSIQVQDKEGALIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMG 389
           T     + + ++   +A EG+YTGQFVYCG++ATL +GNV+P+ ++PEG +VCN+E  +G
Sbjct: 62  TFRHPFRYKHQKELFVAAEGMYTGQFVYCGRRATLSIGNVLPIRSVPEGAVVCNVEHHVG 121

Query: 390 DRGRLARASGNFATVIGHNPDAKPSRVKLPVWSQEGLPS--RTEHGRYCCWRWTYCKPIL 563
           DRG  ARASG++A VI HNPD   SR+KLP  +++ +PS  R   G+      T  KP+L
Sbjct: 122 DRGVFARASGDYAIVISHNPDNGTSRIKLPSGAKKIVPSSCRAMIGQVAGGGRTE-KPML 180

Query: 564 KAG 572
           KAG
Sbjct: 181 KAG 183



 Score =  111 bits (266), Expect = 6e-25
 Identities = 72/176 (40%), Positives = 96/176 (54%), Gaps = 9/176 (5%)
 Frame = +1

Query: 46  AQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDP 225
           AQRKGAGSVF SHT  RKG  + RSLD+ ER+GY+KGVV DIIHDPGRGAPLA V FR P
Sbjct: 7   AQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAKVTFRHP 66

Query: 226 YKFKTRKELLLLPKGSTQANLFIVERKQXXXXXXXXXXXXXXRVPLCAILKRKWVIEVVW 405
           +++K +KEL +  +G          R+                +P+ ++ +   V  V  
Sbjct: 67  FRYKHQKELFVAAEGMYTGQFVYCGRRATLSIGNV--------LPIRSVPEGAVVCNVEH 118

Query: 406 HVPLE--TSPL*LDTILMLSR------QE*SYPSGAKKVCHQE-QSMVGIVAGGGR 546
           HV      +    D  +++S            PSGAKK+     ++M+G VAGGGR
Sbjct: 119 HVGDRGVFARASGDYAIVISHNPDNGTSRIKLPSGAKKIVPSSCRAMIGQVAGGGR 174


>02_05_0058 +
           25478274-25478421,25478963-25479142,25479714-25480007,
           25480261-25480564,25480672-25480751,25480765-25480934
          Length = 391

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/45 (40%), Positives = 27/45 (60%)
 Frame = +3

Query: 369 NLEEKMGDRGRLARASGNFATVIGHNPDAKPSRVKLPVWSQEGLP 503
           N +EK+ D G +ARA  +F  V+GH   A+P  + L V ++  LP
Sbjct: 329 NTKEKLHDLGEIARAKFDF-DVVGHY--ARPEVLSLTVKTESKLP 370


>06_01_0026 +
           265755-265968,267319-267468,267694-267738,267786-268460,
           268779-268843,268854-269073,269163-269438,269547-269663,
           269776-269853,269930-270184,270235-270323,270403-270816
          Length = 865

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +2

Query: 413 LWKLRHCDWT 442
           LWK RHCDWT
Sbjct: 73  LWKCRHCDWT 82


>01_07_0112 -
           41149461-41151674,41151688-41153265,41154344-41155507,
           41155807-41156293,41156603-41156759,41157303-41157378
          Length = 1891

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -1

Query: 444 CVQSQWRSFQRHVPDDLYHPFSLQDCTQWY 355
           C    W++   H+P  L H  +  +C  WY
Sbjct: 73  CSCGLWKATTHHLPSALCHGLNYVNCAMWY 102


>03_05_0874 -
           28429982-28430083,28430284-28430472,28430585-28430655,
           28430754-28431021,28432579-28432818,28433791-28433979
          Length = 352

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = +3

Query: 336 VGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKPSRVKLPVWSQEGLPSRTE 515
           VGA+  G      E + GD G  A  + ++  ++   P A P R  + +W +   P  T+
Sbjct: 31  VGAVELGDERRGEERRGGDGGCAASLTSSWGKLLLLEPRAAPKRTSVVLWREN--PKVTD 88

Query: 516 HGR 524
            GR
Sbjct: 89  FGR 91


>06_03_1366 + 29601921-29602646
          Length = 241

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/71 (23%), Positives = 30/71 (42%)
 Frame = +3

Query: 222 SIQVQDKEGALIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGR 401
           S+++++  GAL+   G          +     +   M  G  PE   V  + E++G+R R
Sbjct: 84  SVRIRNGRGALLMETGQLLSDGTLRSRGGLRPLSEKMRPGETPEAAAVRAVREELGERVR 143

Query: 402 LARASGNFATV 434
           +    G  A V
Sbjct: 144 VRILGGEEARV 154


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,174,334
Number of Sequences: 37544
Number of extensions: 428328
Number of successful extensions: 1086
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)