Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0230
         (660 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)             131   4e-31
SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)       124   5e-29
SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44)    38   0.010
SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.4  

>SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score =  131 bits (317), Expect = 4e-31
 Identities = 76/168 (45%), Positives = 92/168 (54%), Gaps = 1/168 (0%)
 Frame = +1

Query: 49  QRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPY 228
           QRKGAGS+F SHTK RKGA  LR  DYAERHGYIKGVVK+IIHDPGRGAPLAVV FRDPY
Sbjct: 8   QRKGAGSIFTSHTKHRKGAANLRVHDYAERHGYIKGVVKEIIHDPGRGAPLAVVVFRDPY 67

Query: 229 KFKTRKELLLLPKGSTQANLFIVERKQXXXXXXXXXXXXXXRVPLCAILKRKWVIEVVWH 408
           ++K RKEL +  +G          +K                  + + ++ K        
Sbjct: 68  RYKLRKELFVATEGMYTGQFIYCGKKAALQIGNCLPVGIMPEGTIISSVEEKTGDRGRLA 127

Query: 409 VPLETSPL*LDTILMLSRQE*SYPSGAKKVC-HQEQSMVGIVAGGGRI 549
                    +   +   R     PSG KKV     +++VGIVAGGGRI
Sbjct: 128 RTSGNYATVISHNVEKKRTRVKLPSGIKKVIPSSNRALVGIVAGGGRI 175



 Score =  126 bits (305), Expect = 1e-29
 Identities = 61/108 (56%), Positives = 77/108 (71%), Gaps = 1/108 (0%)
 Frame = +3

Query: 255 IAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATV 434
           +A EG+YTGQF+YCGKKA L++GN +PVG MPEGTI+ ++EEK GDRGRLAR SGN+ATV
Sbjct: 77  VATEGMYTGQFIYCGKKAALQIGNCLPVGIMPEGTIISSVEEKTGDRGRLARTSGNYATV 136

Query: 435 IGHNPDAKPSRVKLPVWSQEGLPSRTEH-GRYCCWRWTYCKPILKAGR 575
           I HN + K +RVKLP   ++ +PS                KP+LKAGR
Sbjct: 137 ISHNVEKKRTRVKLPSGIKKVIPSSNRALVGIVAGGGRIDKPMLKAGR 184


>SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)
          Length = 123

 Score =  124 bits (300), Expect = 5e-29
 Identities = 54/84 (64%), Positives = 69/84 (82%)
 Frame = +3

Query: 255 IAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATV 434
           +A EG+YTGQF+YCGKKA L++GN +PVG MPEGTI+ ++EEK GDRGRLAR SGN+ATV
Sbjct: 35  VATEGMYTGQFIYCGKKAALQIGNCLPVGIMPEGTIISSVEEKTGDRGRLARTSGNYATV 94

Query: 435 IGHNPDAKPSRVKLPVWSQEGLPS 506
           I HN + K +RVKLP   ++ +PS
Sbjct: 95  ISHNVEKKRTRVKLPSGIKKVIPS 118



 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 29/39 (74%), Positives = 34/39 (87%)
 Frame = +1

Query: 154 GVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELLLLPKG 270
           GVVK+IIHDPGRGAPLAVV FRDPY++K RKEL +  +G
Sbjct: 1   GVVKEIIHDPGRGAPLAVVVFRDPYRYKLRKELFVATEG 39


>SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44)
          Length = 222

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
 Frame = +3

Query: 237 DKEGALIAPEGLYTGQFVYC--GKK---ATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGR 401
           ++E  +IAP+ +  G  +    GK    A L+ G+  P+  +P GT+V N+E   G   +
Sbjct: 82  NQEKLVIAPDEIQVGDVMTASRGKPESLALLKPGDAYPLCFLPIGTVVHNIELYPGKGAQ 141

Query: 402 LARASGNFATVI 437
           LARA+G  A +I
Sbjct: 142 LARAAGTSAQLI 153


>SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1304

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = -3

Query: 382  FSSRLHTMVPSGIAPTGITFPTSRVAFFPQ*TNWPV*SPSGAI 254
            F+S L T +P+   P G+TF T +V F    +NW + + SG +
Sbjct: 1067 FNSELVTSLPT---PPGLTFTTYKVVFLE--SNWRIGNTSGRV 1104


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,736,411
Number of Sequences: 59808
Number of extensions: 488383
Number of successful extensions: 1106
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1105
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)