Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0230
         (660 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81453-1|CAB03792.1|  260|Caenorhabditis elegans Hypothetical pr...   128   3e-30
AF045646-7|AAK29833.2|  321|Caenorhabditis elegans Hypothetical ...    34   0.078
Z93396-3|CAB07712.1|  597|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z81589-11|CAI58924.1|  330|Caenorhabditis elegans Hypothetical p...    28   5.1  
Z81555-8|CAB04512.2|  330|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z99281-24|CAE18027.1|  155|Caenorhabditis elegans Hypothetical p...    28   6.8  
Z77656-2|CAE17769.1|  724|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>Z81453-1|CAB03792.1|  260|Caenorhabditis elegans Hypothetical
           protein B0250.1 protein.
          Length = 260

 Score =  128 bits (309), Expect = 3e-30
 Identities = 73/168 (43%), Positives = 95/168 (56%), Gaps = 2/168 (1%)
 Frame = +1

Query: 49  QRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPY 228
           QRKGAG +F SH K RKGA KLR LDYAERHGYIKG+VKDIIHDPGRGAPLA++ FRDPY
Sbjct: 8   QRKGAGGIFKSHNKHRKGASKLRPLDYAERHGYIKGLVKDIIHDPGRGAPLAIIAFRDPY 67

Query: 229 KFKTRKELLLLPKG-STQANLFIVERKQXXXXXXXXXXXXXXRVPLCAILKRKWVIEVVW 405
           K+KT K  ++  +G  T   +    + Q                 +C +  +     V+ 
Sbjct: 68  KYKTVKTTVVAAEGMHTGQFIHCGAKAQIQIGNIVPVGTLPEGTTICNVENKSGDRGVIA 127

Query: 406 HVPLETSPL*LDTILMLSRQE*SYPSGAKKVCHQ-EQSMVGIVAGGGR 546
                 + + +       +     PSGAKKV     ++M+G+VAGGGR
Sbjct: 128 RASGNYATV-IAHNPDTKKTRIRLPSGAKKVVQSVNRAMIGLVAGGGR 174



 Score =  123 bits (296), Expect = 1e-28
 Identities = 57/110 (51%), Positives = 81/110 (73%), Gaps = 2/110 (1%)
 Frame = +3

Query: 252 LIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFAT 431
           ++A EG++TGQF++CG KA +++GN++PVG +PEGT +CN+E K GDRG +ARASGN+AT
Sbjct: 76  VVAAEGMHTGQFIHCGAKAQIQIGNIVPVGTLPEGTTICNVENKSGDRGVIARASGNYAT 135

Query: 432 VIGHNPDAKPSRVKLPVWSQEGLPS--RTEHGRYCCWRWTYCKPILKAGR 575
           VI HNPD K +R++LP  +++ + S  R   G       T  KP+LKAGR
Sbjct: 136 VIAHNPDTKKTRIRLPSGAKKVVQSVNRAMIGLVAGGGRT-DKPLLKAGR 184


>AF045646-7|AAK29833.2|  321|Caenorhabditis elegans Hypothetical
           protein F56B3.8 protein.
          Length = 321

 Score = 34.3 bits (75), Expect = 0.078
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +3

Query: 321 GNVMPVGAMPEGTIVCNLEE-KMGDRGRLARASGNFATVIGHNPDAKPSRVKLP 479
           GN  P+G++  GT++ ++E     D     +A+G  AT++ H  D   + VKLP
Sbjct: 160 GNAYPIGSLAAGTVINSIERYPTMDSETFVKAAGTSATIVRHQGDF--TVVKLP 211


>Z93396-3|CAB07712.1|  597|Caenorhabditis elegans Hypothetical
           protein ZC15.5 protein.
          Length = 597

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = -2

Query: 326 ISNFKSCFLSTINKLACVEPFGSNKSSFLVLNLYGSRKCT 207
           ISNFK+ F  T++ +A   P   NK S++VL L+  ++ T
Sbjct: 151 ISNFKTIFFGTLSPVA-KTPRLLNKRSYVVLKLFTFQRKT 189


>Z81589-11|CAI58924.1|  330|Caenorhabditis elegans Hypothetical
           protein F58E10.6 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 139 HGYIKGVVKDIIHDPGRGAPLAVVHFR 219
           HG +  +V  I+H P R + LA +HF+
Sbjct: 285 HGVLSTIVMLIVHTPHRKSILATLHFK 311


>Z81555-8|CAB04512.2|  330|Caenorhabditis elegans Hypothetical
           protein F58E10.6 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 139 HGYIKGVVKDIIHDPGRGAPLAVVHFR 219
           HG +  +V  I+H P R + LA +HF+
Sbjct: 285 HGVLSTIVMLIVHTPHRKSILATLHFK 311


>Z99281-24|CAE18027.1|  155|Caenorhabditis elegans Hypothetical
           protein Y57G11C.44 protein.
          Length = 155

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +1

Query: 76  VSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPL 201
           +S  ++RK +     LD+++  G  K ++KDI +D  +  P+
Sbjct: 1   MSEVRQRKSSIIDSDLDFSDSDGEFKEIIKDIENDQWKDKPV 42


>Z77656-2|CAE17769.1|  724|Caenorhabditis elegans Hypothetical
           protein F07B10.4 protein.
          Length = 724

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +2

Query: 524 VLLLEVDVLQTYFESWKG--FHKYKXNVLWHMSWXAMNP 634
           +L+L VD ++ Y   WK   F KY+ N +W   +  ++P
Sbjct: 164 LLILNVDNIE-YQSQWKKEFFQKYQLNFIWCPKYYVLDP 201


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,744,831
Number of Sequences: 27780
Number of extensions: 355159
Number of successful extensions: 883
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)