Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0229
(666 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0561 - 15476484-15476649,15476814-15476893,15476971-154770... 80 2e-15
01_01_1138 - 9019049-9019159,9019525-9019606,9020059-9020177,902... 43 2e-04
07_01_0842 + 6840943-6841288,6841800-6841970,6842762-6842832,684... 43 3e-04
05_05_0295 - 23912502-23912507,23912631-23912712,23913020-239131... 43 3e-04
03_06_0420 + 33794045-33794192,33794831-33794901,33795093-337952... 43 3e-04
01_06_1108 + 34574299-34574446,34575000-34575070,34575246-345753... 43 3e-04
10_08_1062 + 22626262-22626318,22626404-22626494,22626601-226267... 42 4e-04
02_05_0413 + 28773869-28773925,28774045-28774135,28774515-287746... 41 0.001
07_01_0844 + 6855195-6855342,6855752-6855802,6856460-6856530,685... 40 0.002
06_01_0098 + 818374-818427,818537-818627,818753-818868,818962-81... 37 0.013
02_01_0226 + 1476529-1476585,1477207-1477297,1478247-1478362,147... 35 0.051
08_01_0921 + 9075409-9075511,9075606-9075689,9075744-9075806,907... 34 0.088
01_03_0154 + 13269335-13269463,13269597-13269728,13270704-13271024 31 0.62
12_02_0764 - 22973675-22973995,22975626-22975757,22977074-22977202 31 0.82
10_01_0089 + 1103841-1104152,1104809-1104946,1105527-1105631,110... 31 0.82
05_03_0589 - 15872006-15872126,15872389-15872438,15872767-158728... 30 1.9
12_02_0966 - 24906361-24906958,24907084-24907250,24907403-249076... 28 5.8
11_01_0307 + 2304500-2306023 28 5.8
06_01_0853 + 6486027-6486158,6486561-6486692,6486974-6486978,648... 28 5.8
06_01_0267 - 1972988-1973148,1973275-1973403,1973881-1974024,197... 28 5.8
04_04_1032 - 30259180-30260519,30260650-30260720,30261099-302621... 28 5.8
05_07_0059 + 27402365-27402733,27402848-27402982,27403070-274031... 28 7.7
04_03_0707 - 18886191-18886402,18886828-18887134,18887139-18887405 28 7.7
03_05_0865 - 28365430-28367640 28 7.7
>05_03_0561 -
15476484-15476649,15476814-15476893,15476971-15477030,
15477117-15477210,15477287-15477421,15477601-15477656,
15478359-15478460,15478544-15478651,15479206-15479283,
15479432-15479521,15480061-15480123
Length = 343
Score = 79.8 bits (188), Expect = 2e-15
Identities = 36/78 (46%), Positives = 53/78 (67%), Gaps = 6/78 (7%)
Frame = +3
Query: 258 AKYFLDDLDRLGAKDYQPTEQDILRTXVKTTGIXEVHFSFKNLN------FKLFDVGGQX 419
A+YF+++LDRL Y PT++D+L V+T G+ ++ FS N ++L+DVGGQ
Sbjct: 128 AQYFMENLDRLAEAGYVPTKEDVLYARVRTNGVVQIQFSPVGENKRGGEVYRLYDVGGQR 187
Query: 420 SERKKWIHCFEDVTAIIF 473
+ER+KWIH FE V A+IF
Sbjct: 188 NERRKWIHLFEGVNAVIF 205
Score = 34.3 bits (75), Expect = 0.088
Identities = 18/53 (33%), Positives = 30/53 (56%)
Frame = +1
Query: 97 DRESDGKMVFDVIQRMEDTEPFSEELLAAMKRLWADSGVQECFGRSNEYQLND 255
D + G+ + D+ R+ D ++EL+ +KRLW D +QE + R + QL D
Sbjct: 75 DNQEIGEKLSDIDGRL-DYPLLNKELVLDVKRLWQDPAIQETYLRGSILQLPD 126
>01_01_1138 -
9019049-9019159,9019525-9019606,9020059-9020177,
9020977-9021096,9021313-9021383,9021801-9021948
Length = 216
Score = 43.2 bits (97), Expect = 2e-04
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Frame = +3
Query: 231 FQRVPTQRSAKYFLDDLDRLGAKD--YQPTEQDILRTXVKTTGIXEVHFSFKNLNFKLFD 404
F R+ +++ + + LD G Y+ +I+ T + T G +KN++F ++D
Sbjct: 9 FSRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWD 67
Query: 405 VGGQXSERKKWIHCFEDVTAIIFXV 479
VGGQ R W H F++ +IF V
Sbjct: 68 VGGQDKIRPLWRHYFQNTQGLIFVV 92
>07_01_0842 +
6840943-6841288,6841800-6841970,6842762-6842832,
6843068-6843187,6843654-6843772,6844045-6844126,
6844254-6844259
Length = 304
Score = 42.7 bits (96), Expect = 3e-04
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Frame = +3
Query: 231 FQRVPTQRSAKYFLDDLDRLGAKD--YQPTEQDILRTXVKTTGIXEVHFSFKNLNFKLFD 404
F R+ ++ + + LD G Y+ +I+ T + T G +KN++F ++D
Sbjct: 132 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWD 190
Query: 405 VGGQXSERKKWIHCFEDVTAIIFXV 479
VGGQ R W H F++ +IF V
Sbjct: 191 VGGQDKIRPLWRHYFQNTQGLIFVV 215
>05_05_0295 -
23912502-23912507,23912631-23912712,23913020-23913138,
23913480-23913599,23913927-23913997,23914525-23914672
Length = 181
Score = 42.7 bits (96), Expect = 3e-04
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Frame = +3
Query: 231 FQRVPTQRSAKYFLDDLDRLGAKD--YQPTEQDILRTXVKTTGIXEVHFSFKNLNFKLFD 404
F R+ ++ + + LD G Y+ +I+ T + T G +KN++F ++D
Sbjct: 9 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWD 67
Query: 405 VGGQXSERKKWIHCFEDVTAIIFXV 479
VGGQ R W H F++ +IF V
Sbjct: 68 VGGQDKIRPLWRHYFQNTQGLIFVV 92
>03_06_0420 +
33794045-33794192,33794831-33794901,33795093-33795212,
33795466-33795584,33795775-33795856,33795984-33795989
Length = 181
Score = 42.7 bits (96), Expect = 3e-04
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Frame = +3
Query: 231 FQRVPTQRSAKYFLDDLDRLGAKD--YQPTEQDILRTXVKTTGIXEVHFSFKNLNFKLFD 404
F R+ ++ + + LD G Y+ +I+ T + T G +KN++F ++D
Sbjct: 9 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWD 67
Query: 405 VGGQXSERKKWIHCFEDVTAIIFXV 479
VGGQ R W H F++ +IF V
Sbjct: 68 VGGQDKIRPLWRHYFQNTQGLIFVV 92
>01_06_1108 +
34574299-34574446,34575000-34575070,34575246-34575365,
34575471-34575488,34575708-34575826,34576244-34576325,
34576537-34576542
Length = 187
Score = 42.7 bits (96), Expect = 3e-04
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Frame = +3
Query: 231 FQRVPTQRSAKYFLDDLDRLGAKD--YQPTEQDILRTXVKTTGIXEVHFSFKNLNFKLFD 404
F R+ ++ + + LD G Y+ +I+ T + T G +KN++F ++D
Sbjct: 9 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWD 67
Query: 405 VGGQXSERKKWIHCFEDVTAIIFXV 479
VGGQ R W H F++ +IF V
Sbjct: 68 VGGQDKIRPLWRHYFQNTQGLIFVV 92
>10_08_1062 +
22626262-22626318,22626404-22626494,22626601-22626716,
22627035-22627094,22627204-22627269,22627726-22627914
Length = 192
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/60 (36%), Positives = 32/60 (53%)
Frame = +3
Query: 321 DILRTXVKTTGIXEVHFSFKNLNFKLFDVGGQXSERKKWIHCFEDVTAIIFXVPCLNMXR 500
++L T V T G +KN+ F ++DVGGQ R W H F + A+I+ V L+ R
Sbjct: 41 EVLST-VPTIGFNVEKVQYKNVVFTVWDVGGQEKLRPLWRHYFNNTDALIYVVDSLDRER 99
>02_05_0413 +
28773869-28773925,28774045-28774135,28774515-28774630,
28775627-28775686,28775767-28775832,28776499-28776693
Length = 194
Score = 40.7 bits (91), Expect = 0.001
Identities = 21/60 (35%), Positives = 31/60 (51%)
Frame = +3
Query: 321 DILRTXVKTTGIXEVHFSFKNLNFKLFDVGGQXSERKKWIHCFEDVTAIIFXVPCLNMXR 500
++L T V T G +KN+ F ++DVGGQ R W H F + +I+ V L+ R
Sbjct: 41 EVLST-VPTIGFNVEKVQYKNVMFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRER 99
>07_01_0844 +
6855195-6855342,6855752-6855802,6856460-6856530,
6856736-6856855,6857043-6857161,6857377-6857458,
6857592-6857597
Length = 198
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +3
Query: 327 LRTXVKTTGIXEVHFSFKNLNFKLFDVGGQXSERKKWIHCFEDVTAIIFXV 479
L+ + G +KN++F ++DVGGQ R W H F++ +IF V
Sbjct: 59 LKAITEEKGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 109
>06_01_0098 +
818374-818427,818537-818627,818753-818868,818962-819087,
819175-819357
Length = 189
Score = 37.1 bits (82), Expect = 0.013
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +3
Query: 339 VKTTGIXEVHFSFKNLNFKLFDVGGQXSERKKWIHCFEDVTAIIFXVPCLNMXR 500
+ T G +KN+ F ++DVGGQ R W F + A+I+ V ++ R
Sbjct: 45 IPTIGFNVEKVEYKNVAFTVWDVGGQDKLRPLWRQYFRNADALIYVVDSMDRER 98
>02_01_0226 +
1476529-1476585,1477207-1477297,1478247-1478362,
1478834-1478893,1479000-1479065,1479847-1480047
Length = 196
Score = 35.1 bits (77), Expect = 0.051
Identities = 20/60 (33%), Positives = 30/60 (50%)
Frame = +3
Query: 321 DILRTXVKTTGIXEVHFSFKNLNFKLFDVGGQXSERKKWIHCFEDVTAIIFXVPCLNMXR 500
++L T V T G +KN+ F ++DVGGQ R W + A+I+ V L+ R
Sbjct: 41 EVLST-VPTVGFNVEKVQYKNVVFTVWDVGGQEKLRPLWKMYLSNSDALIYVVDSLDRER 99
>08_01_0921 +
9075409-9075511,9075606-9075689,9075744-9075806,
9077163-9077181,9078227-9078338,9078902-9078949,
9079372-9079502,9079673-9079757,9079776-9079784
Length = 217
Score = 34.3 bits (75), Expect = 0.088
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +3
Query: 375 FKNLNFKLFDVGGQXSERKKWIHCFEDVTAIIFXVPCLNMXRXCT 509
+ N+ F+++D+GGQ S R W F + AII+ V + R T
Sbjct: 73 YNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTDRLVT 117
>01_03_0154 + 13269335-13269463,13269597-13269728,13270704-13271024
Length = 193
Score = 31.5 bits (68), Expect = 0.62
Identities = 26/99 (26%), Positives = 37/99 (37%), Gaps = 1/99 (1%)
Frame = +3
Query: 207 WRSGVLWSFQRVPTQRSAKYFLDDLDRLGAKDY-QPTEQDILRTXVKTTGIXEVHFSFKN 383
W GVL S Q+ AK LD G + + L T S
Sbjct: 6 WFYGVLASLGL--WQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGK 63
Query: 384 LNFKLFDVGGQXSERKKWIHCFEDVTAIIFXVPCLNMXR 500
+ FK FD+GG R+ W + V A+++ V + R
Sbjct: 64 IKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKER 102
>12_02_0764 - 22973675-22973995,22975626-22975757,22977074-22977202
Length = 193
Score = 31.1 bits (67), Expect = 0.82
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +3
Query: 372 SFKNLNFKLFDVGGQXSERKKWIHCFEDVTAIIFXVPCLNMXR 500
S + FK FD+GG R+ W + V A+++ V + R
Sbjct: 60 SIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKER 102
>10_01_0089 +
1103841-1104152,1104809-1104946,1105527-1105631,
1106403-1106577,1107124-1107398,1108222-1108391,
1108508-1109084
Length = 583
Score = 31.1 bits (67), Expect = 0.82
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3
Query: 258 AKYFLDDLDRLGAKDYQPTEQDIL 329
A YFLD + + + +Y+PTE DIL
Sbjct: 329 ASYFLDRVVEISSNEYEPTETDIL 352
>05_03_0589 -
15872006-15872126,15872389-15872438,15872767-15872835,
15873027-15873128,15873874-15873951,15874100-15874189,
15874730-15874822
Length = 200
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +3
Query: 258 AKYFLDDLDRLGAKDYQPTE 317
A+YF+++LDRL DY PT+
Sbjct: 102 AQYFMENLDRLAEADYVPTK 121
>12_02_0966 -
24906361-24906958,24907084-24907250,24907403-24907650,
24907824-24908001,24908196-24908372,24908459-24908563,
24908633-24908770,24909757-24910836
Length = 896
Score = 28.3 bits (60), Expect = 5.8
Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 20/95 (21%)
Frame = +3
Query: 255 SAKYFLDDLDRLGAKDYQPTEQDILRT--XVKTTGIXEVHFSFKN--------------- 383
+A YFLD + +Y+ ++ DIL + G+ FSF
Sbjct: 635 AASYFLDKAVDISRTEYELSDMDILYADGITSSDGLASTDFSFPQLALDGRGFDEPDPQD 694
Query: 384 --LNFKLFDVGGQ-XSERKKWIHCFEDVTAIIFXV 479
L ++L + + E KW+ F+DV +IF V
Sbjct: 695 TLLRYQLIRINNKGLHENCKWLQMFDDVRLVIFCV 729
>11_01_0307 + 2304500-2306023
Length = 507
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 66 AQLGHHLWQ*RPRKRW*DGVRRDSTDGG 149
A +GH LWQ R R+R G+ ++ T G
Sbjct: 463 AYVGHRLWQRRRRRRRAGGMEQELTSSG 490
>06_01_0853 +
6486027-6486158,6486561-6486692,6486974-6486978,
6487948-6488017,6489456-6489776
Length = 219
Score = 28.3 bits (60), Expect = 5.8
Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Frame = +3
Query: 249 QRSAKYFLDDLDRLGAKD-YQPTEQDILRTXVKTTGIXEVHFSFKNLNFKLFDVGGQXSE 425
Q+ AK LD G + Q+ L T S + FK FD+GG
Sbjct: 19 QKEAKILFLGLDNAGKTTLFYMLSQENLAVHQPTQHPTSEELSIGRIRFKAFDLGGHRIA 78
Query: 426 RKKW 437
R+ W
Sbjct: 79 RRVW 82
>06_01_0267 -
1972988-1973148,1973275-1973403,1973881-1974024,
1974368-1974493,1974595-1974720,1975149-1975241,
1975465-1975606,1976747-1976878,1976943-1977080,
1977431-1977523,1978186-1978389,1978568-1978656,
1978839-1978988,1979088-1979253,1979355-1979576,
1979687-1979872,1980289-1980411,1980511-1980611,
1982005-1982155
Length = 891
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -1
Query: 276 RPGNI*RIVELVLVGTTKALLNARVGPEPFHRGEKLLTERF 154
R + R+++ GT + L +GP P HRGE T F
Sbjct: 353 RDSKLTRLLKDSFGGTARTSLVVTIGPSPRHRGETTSTIMF 393
>04_04_1032 -
30259180-30260519,30260650-30260720,30261099-30262118,
30263886-30264121
Length = 888
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 207 WRSGVLWSFQRVPTQRSAKYFLDDLDRLGAKDYQP 311
WR+G + R+P S + LDD D G D P
Sbjct: 729 WRTGRRTAMPRIPRSNSTRVTLDDGDDEGLWDMNP 763
>05_07_0059 + 27402365-27402733,27402848-27402982,27403070-27403183,
27403297-27403449,27403544-27403644,27403945-27404041,
27404542-27404651,27404775-27404878,27405129-27405308,
27405398-27405741,27405841-27405905,27405981-27406450,
27406939-27407793,27408045-27408116,27408475-27408575,
27409069-27409170,27409295-27409456,27409665-27411230,
27411384-27411602,27413924-27414198,27414291-27414596,
27414727-27415012,27415085-27415087,27415162-27415416,
27415537-27415803
Length = 2236
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = -1
Query: 276 RPGNI*RIVELVLVGTTKALLNARVGPEPFHRGEKLLTERFRVL 145
+ G + R VEL+ + ++NA VG +P + EKL +E ++
Sbjct: 1915 KEGIVQRRVELMAKEGVQFIVNAHVGSDPLYSVEKLRSENDAII 1958
>04_03_0707 - 18886191-18886402,18886828-18887134,18887139-18887405
Length = 261
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 5/38 (13%)
Frame = -3
Query: 103 LGLYCHR*CPSWAWHAR-----WRRATGSYCCRPXXXP 5
LG+ CH C W A WRRATG+ P P
Sbjct: 59 LGISCHNGCVVWDRFAAIGYDPWRRATGTSSVLPPALP 96
>03_05_0865 - 28365430-28367640
Length = 736
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +1
Query: 43 LVAILRAMPNLGIIYGNRDRESDGKMVFDVIQRMEDTEPFSEELLA 180
+V +L AMP+ + N D E D K ++ T P + E LA
Sbjct: 486 VVGVLDAMPSSNLKPENEDEELDAKTIYRTTYMFSATMPPAVERLA 531
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,010,834
Number of Sequences: 37544
Number of extensions: 375641
Number of successful extensions: 1020
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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