Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0227
         (654 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    26   0.24 
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    24   0.95 
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   6.7  

>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 26.2 bits (55), Expect = 0.24
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +1

Query: 445 SAGHFFLQQPLHPTFPR*RASRLWPHVQNPVCRRCTPR 558
           SA    + QPLHP+ PR      WP     + R  +P+
Sbjct: 59  SAHTVLIPQPLHPSVPR-LGHPQWPFAWGSLXRSSSPQ 95


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 24.2 bits (50), Expect = 0.95
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
 Frame = +2

Query: 134 VGLLIGKHGSFVT---QIKAKTGASVYVRRHPESSKQKICAV 250
           V   +G HGS ++       K+  S Y   HP S  + +C++
Sbjct: 47  VSFSMGGHGSLLSPSGNTPNKSSTSPYPPNHPLSGSKHLCSI 88


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = -3

Query: 508 VKHVSAETWGAGAAEGRSAPHSPDTSISCR 419
           V  +S E W      G   P  P TSI  R
Sbjct: 110 VSCISEEVWSKLIETGNKPPTLPVTSIHLR 139


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,247
Number of Sequences: 336
Number of extensions: 3005
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16865010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)