Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0227
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    31   0.19 
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur...    29   0.77 
SPCC18.16c |fmn1||riboflavin kinase Fmn1|Schizosaccharomyces pom...    27   2.4  
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    27   3.1  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    26   4.1  
SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3 |Schizosacchar...    25   7.2  
SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase ...    25   7.2  
SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    25   7.2  

>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 128 NLVGLLIGKHGSFVTQIKAKTGASVYVR 211
           N +GLLIG  G  +  ++AK+GA + +R
Sbjct: 201 NFIGLLIGPRGHTLKDMEAKSGAKIAIR 228


>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
           deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 398

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 9/31 (29%), Positives = 22/31 (70%)
 Frame = +2

Query: 128 NLVGLLIGKHGSFVTQIKAKTGASVYVRRHP 220
           ++VG +IG+ GS +++I+  +G+ + + + P
Sbjct: 330 DMVGCIIGRGGSKISEIRRTSGSKISIAKEP 360


>SPCC18.16c |fmn1||riboflavin kinase Fmn1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 163

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
 Frame = +2

Query: 452 GTSSFSSPCTPRFRADVLHGYGRTSR---TPCAVVARPVKKEL 571
           G     SP   RF   V+HG+GR S+    P A ++    +EL
Sbjct: 14  GPEKVQSPYPIRFEGKVVHGFGRGSKELGIPTANISEDAIQEL 56


>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -3

Query: 196 CTSFGFNLSHK*TMFSY*KTYKILR*NKLVYPKVCFCWNY 77
           C+ F  N      +FS+   Y +L+  K +  K+ +C++Y
Sbjct: 45  CSKFSMNSLKFCVLFSFKTVYSLLKLIKTLIRKLLYCFHY 84


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 15/79 (18%), Positives = 33/79 (41%)
 Frame = +2

Query: 5   TXEGSSDSGKGCSEAASPPPASLNIVPTETDLRIHQFVLSQNLVGLLIGKHGSFVTQIKA 184
           T  GS+ +    + ++SP  ++ +++PT     +  F  S +     +    + VT    
Sbjct: 276 TTTGSTTTTGSATVSSSPFYSNSSVIPTSVPSSVSSFTSSSSSYTTTLTASNTSVTYTGT 335

Query: 185 KTGASVYVRRHPESSKQKI 241
            TG++ +    P  S   +
Sbjct: 336 GTGSATFTSSPPFYSNSSV 354



 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/74 (18%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
 Frame = +2

Query: 26  SGKGCSEAASPPP--ASLNIVPTETDLRIHQFVLSQNLVGLLIGKHGSFVTQIKAKTGAS 199
           +G G +   S PP  ++ +++PT     +  F  S +     +    + +T     TG++
Sbjct: 335 TGTGSATFTSSPPFYSNSSVIPTSVPSSVSSFTSSNSSYTTTLTASNTSITYTGTGTGSA 394

Query: 200 VYVRRHPESSKQKI 241
            +    P  S   +
Sbjct: 395 TFTSSPPFYSNSSV 408


>SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 194 HQFWL*FESQMNHVFLLKDLQDFEIKQIGVS 102
           H FW    S+ N VFLL +L    + Q G++
Sbjct: 468 HLFWAASISEKNEVFLLTELNVSTLLQPGIN 498


>SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase
           Ade6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 552

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = -2

Query: 641 SSADDHSLQGNIIGRXNISEXSQIAPFSRGVQRRHTGFWTCGHSREARQRGNV 483
           S++  H+L  NI+G  +    S+IA  S  +       +    SR+ R+ G+V
Sbjct: 307 STSTTHALMVNILGTDDPDYVSKIAKRSLSIPGATLHLYGKAESRKGRKMGHV 359


>SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 343

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 41  SEAASPPPASLNIVPTETDLRIHQFVLSQNLVGLLIG 151
           + A++PP AS + +P       H  V++  +VG+L G
Sbjct: 72  TSASTPPSASASSLPNGAQKHNHTGVIAGPIVGVLGG 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,582,947
Number of Sequences: 5004
Number of extensions: 51475
Number of successful extensions: 136
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)