Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0227
(654 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23177-8|AAM22054.1| 409|Caenorhabditis elegans Hypothetical pr... 48 8e-06
U23177-7|AAM22053.1| 867|Caenorhabditis elegans Hypothetical pr... 48 8e-06
Z34802-8|CAH10787.1| 704|Caenorhabditis elegans Hypothetical pr... 43 2e-04
Z34802-7|CAA84338.2| 828|Caenorhabditis elegans Hypothetical pr... 43 2e-04
L25598-6|AAA27939.2| 886|Caenorhabditis elegans Hypothetical pr... 33 0.18
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 33 0.23
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 33 0.23
Z73969-19|CAJ43440.1| 548|Caenorhabditis elegans Hypothetical p... 32 0.31
Z73969-2|CAA98233.1| 611|Caenorhabditis elegans Hypothetical pr... 32 0.31
Z73969-1|CAA98232.1| 589|Caenorhabditis elegans Hypothetical pr... 32 0.31
U41019-3|AAA82329.3| 531|Caenorhabditis elegans Sop-2 related (... 31 0.71
U97403-4|AAB52474.2| 445|Caenorhabditis elegans Hypothetical pr... 31 0.94
Z68222-9|CAE46689.1| 631|Caenorhabditis elegans Hypothetical pr... 28 1.2
Z68217-11|CAE46673.1| 631|Caenorhabditis elegans Hypothetical p... 28 1.2
Z68222-8|CAC70146.2| 613|Caenorhabditis elegans Hypothetical pr... 28 1.2
Z68217-10|CAC70099.2| 613|Caenorhabditis elegans Hypothetical p... 28 1.2
AC024089-1|AAK09071.1| 641|Caenorhabditis elegans Hypothetical ... 30 1.6
AF273780-1|AAG15129.1| 509|Caenorhabditis elegans nuclear recep... 27 2.0
Z68217-4|CAA92467.2| 499|Caenorhabditis elegans Hypothetical pr... 27 2.1
Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical p... 29 2.9
Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical p... 29 2.9
Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical pr... 29 2.9
AC084158-25|AAM15620.2| 384|Caenorhabditis elegans Hypothetical... 29 2.9
AL132949-9|CAB61081.1| 254|Caenorhabditis elegans Hypothetical ... 28 5.0
AC006714-9|AAK29714.5| 430|Caenorhabditis elegans Patterned exp... 28 5.0
U88174-6|AAB42272.1| 680|Caenorhabditis elegans Hypothetical pr... 27 8.8
>U23177-8|AAM22054.1| 409|Caenorhabditis elegans Hypothetical
protein C56G2.1b protein.
Length = 409
Score = 47.6 bits (108), Expect = 8e-06
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Frame = +2
Query: 17 SSDSGKGCSEAASPPPASLNIVPTETD-LRIHQFVLSQNLVGLLIGKHGSFVTQIKAKTG 193
S DSG+ ASP L TE D L +++F + +LVGL+IG G + ++ +T
Sbjct: 45 SQDSGRATGPLASPHEDGLT---TEDDFLPMYEFEIPNSLVGLIIGVKGKTIKELSVRTN 101
Query: 194 ASVYVRRHPESSKQK---ICAV 250
+ +R+H E+ K K IC V
Sbjct: 102 VRMLIRQHHETDKVKTHQICQV 123
Score = 39.1 bits (87), Expect = 0.003
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Frame = +1
Query: 229 QTENMCS*R-TQSEIEAALDMIXXXXXXXXXXNFSLQEISAELY--QKLTPLIPEFLQLQ 399
+T +C R + EI L M+ +LQ + + L + L
Sbjct: 116 KTHQICQVRGKRDEINHCLQMLRRRFPPARFPELNLQPVVPPVLPNSNFDMLSTQPTWLT 175
Query: 400 LVESVNNDTILTCLVSAGHFFLQQPLHPTF 489
L E + + ++ ++SA HFF+QQP HP+F
Sbjct: 176 LPEDIKCEVAVSSIISASHFFIQQPTHPSF 205
>U23177-7|AAM22053.1| 867|Caenorhabditis elegans Hypothetical
protein C56G2.1a protein.
Length = 867
Score = 47.6 bits (108), Expect = 8e-06
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Frame = +2
Query: 17 SSDSGKGCSEAASPPPASLNIVPTETD-LRIHQFVLSQNLVGLLIGKHGSFVTQIKAKTG 193
S DSG+ ASP L TE D L +++F + +LVGL+IG G + ++ +T
Sbjct: 503 SQDSGRATGPLASPHEDGLT---TEDDFLPMYEFEIPNSLVGLIIGVKGKTIKELSVRTN 559
Query: 194 ASVYVRRHPESSKQK---ICAV 250
+ +R+H E+ K K IC V
Sbjct: 560 VRMLIRQHHETDKVKTHQICQV 581
Score = 39.1 bits (87), Expect = 0.003
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Frame = +1
Query: 229 QTENMCS*R-TQSEIEAALDMIXXXXXXXXXXNFSLQEISAELY--QKLTPLIPEFLQLQ 399
+T +C R + EI L M+ +LQ + + L + L
Sbjct: 574 KTHQICQVRGKRDEINHCLQMLRRRFPPARFPELNLQPVVPPVLPNSNFDMLSTQPTWLT 633
Query: 400 LVESVNNDTILTCLVSAGHFFLQQPLHPTF 489
L E + + ++ ++SA HFF+QQP HP+F
Sbjct: 634 LPEDIKCEVAVSSIISASHFFIQQPTHPSF 663
>Z34802-8|CAH10787.1| 704|Caenorhabditis elegans Hypothetical
protein M88.5b protein.
Length = 704
Score = 43.2 bits (97), Expect = 2e-04
Identities = 28/85 (32%), Positives = 38/85 (44%)
Frame = +2
Query: 14 GSSDSGKGCSEAASPPPASLNIVPTETDLRIHQFVLSQNLVGLLIGKHGSFVTQIKAKTG 193
G+S S PP L I P T+LR + + +++G LIG G + I TG
Sbjct: 388 GASSSAVSAPHFIPTPPGVLQIQPGTTNLRQVRMWVPDSMIGALIGAKGKNIKMIIRDTG 447
Query: 194 ASVYVRRHPESSKQKICAVEEHKVK 268
ASV + PE Q+ E K K
Sbjct: 448 ASVKIEA-PEEKTQREAEEAEKKRK 471
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +2
Query: 131 LVGLLIGKHGSFVTQIKAKTGASVYVRRHPE 223
L G LIGK GS + +I KTG ++ V ++ E
Sbjct: 285 LCGRLIGKAGSSIKEIMQKTGTNITVTKYIE 315
>Z34802-7|CAA84338.2| 828|Caenorhabditis elegans Hypothetical
protein M88.5a protein.
Length = 828
Score = 43.2 bits (97), Expect = 2e-04
Identities = 28/85 (32%), Positives = 38/85 (44%)
Frame = +2
Query: 14 GSSDSGKGCSEAASPPPASLNIVPTETDLRIHQFVLSQNLVGLLIGKHGSFVTQIKAKTG 193
G+S S PP L I P T+LR + + +++G LIG G + I TG
Sbjct: 512 GASSSAVSAPHFIPTPPGVLQIQPGTTNLRQVRMWVPDSMIGALIGAKGKNIKMIIRDTG 571
Query: 194 ASVYVRRHPESSKQKICAVEEHKVK 268
ASV + PE Q+ E K K
Sbjct: 572 ASVKIEA-PEEKTQREAEEAEKKRK 595
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +2
Query: 131 LVGLLIGKHGSFVTQIKAKTGASVYVRRHPE 223
L G LIGK GS + +I KTG ++ V ++ E
Sbjct: 409 LCGRLIGKAGSSIKEIMQKTGTNITVTKYIE 439
>L25598-6|AAA27939.2| 886|Caenorhabditis elegans Hypothetical
protein C06G4.1 protein.
Length = 886
Score = 33.1 bits (72), Expect = 0.18
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +2
Query: 83 PTETDLRIHQFVLSQNLVGLLIGKHGSFVTQIKAKTGASVYV 208
P + D I Q + +N+V LIG+HG + +I++++ A Y+
Sbjct: 770 PADDDPGIFQVRVPENMVARLIGRHGVEINRIRSESKAKCYL 811
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 32.7 bits (71), Expect = 0.23
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +2
Query: 128 NLVGLLIGKHGSFVTQIKAKTGASVYVR 211
N VGLLIG G+ + ++A+TGA + +R
Sbjct: 318 NFVGLLIGPRGNTLKSLEAETGAKIIIR 345
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 32.7 bits (71), Expect = 0.23
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +2
Query: 128 NLVGLLIGKHGSFVTQIKAKTGASVYVR 211
N VGLLIG G+ + ++A+TGA + +R
Sbjct: 318 NFVGLLIGPRGNTLKSLEAETGAKIIIR 345
>Z73969-19|CAJ43440.1| 548|Caenorhabditis elegans Hypothetical
protein C12D8.1c protein.
Length = 548
Score = 32.3 bits (70), Expect = 0.31
Identities = 13/47 (27%), Positives = 27/47 (57%)
Frame = +2
Query: 110 QFVLSQNLVGLLIGKHGSFVTQIKAKTGASVYVRRHPESSKQKICAV 250
+ V+ ++ VG++IGK G + ++ +TG + + + S + CAV
Sbjct: 189 EVVVPRSSVGIIIGKQGDTIKRLAMETGTKIQFKPDDDPSTPERCAV 235
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +2
Query: 110 QFVLSQNLVGLLIGKHGSFVTQIKAKTGASV 202
++ + ++ VG++IG+ GS + I+AK G V
Sbjct: 10 KYPIPESAVGIVIGRGGSEIQGIQAKAGCRV 40
>Z73969-2|CAA98233.1| 611|Caenorhabditis elegans Hypothetical
protein C12D8.1b protein.
Length = 611
Score = 32.3 bits (70), Expect = 0.31
Identities = 13/47 (27%), Positives = 27/47 (57%)
Frame = +2
Query: 110 QFVLSQNLVGLLIGKHGSFVTQIKAKTGASVYVRRHPESSKQKICAV 250
+ V+ ++ VG++IGK G + ++ +TG + + + S + CAV
Sbjct: 252 EVVVPRSSVGIIIGKQGDTIKRLAMETGTKIQFKPDDDPSTPERCAV 298
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +2
Query: 110 QFVLSQNLVGLLIGKHGSFVTQIKAKTGASV 202
++ + ++ VG++IG+ GS + I+AK G V
Sbjct: 73 KYPIPESAVGIVIGRGGSEIQGIQAKAGCRV 103
>Z73969-1|CAA98232.1| 589|Caenorhabditis elegans Hypothetical
protein C12D8.1a protein.
Length = 589
Score = 32.3 bits (70), Expect = 0.31
Identities = 13/47 (27%), Positives = 27/47 (57%)
Frame = +2
Query: 110 QFVLSQNLVGLLIGKHGSFVTQIKAKTGASVYVRRHPESSKQKICAV 250
+ V+ ++ VG++IGK G + ++ +TG + + + S + CAV
Sbjct: 230 EVVVPRSSVGIIIGKQGDTIKRLAMETGTKIQFKPDDDPSTPERCAV 276
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +2
Query: 110 QFVLSQNLVGLLIGKHGSFVTQIKAKTGASV 202
++ + ++ VG++IG+ GS + I+AK G V
Sbjct: 51 KYPIPESAVGIVIGRGGSEIQGIQAKAGCRV 81
>U41019-3|AAA82329.3| 531|Caenorhabditis elegans Sop-2 related
(ectopic expressionof hox genes) protein 3 protein.
Length = 531
Score = 31.1 bits (67), Expect = 0.71
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +2
Query: 86 TETDLRIHQFVLSQNLVGLLIGKHGSFVTQIKAKTGASVYVRRHPESSKQKICAVE 253
TE + ++LS+NLV ++ K F +I + +++V R ES K+K VE
Sbjct: 61 TEAATSLKMWMLSKNLVVIVKRKDDIFPCKILTRNPENLFVARFLESGKEKHIQVE 116
>U97403-4|AAB52474.2| 445|Caenorhabditis elegans Hypothetical
protein T10E9.7a protein.
Length = 445
Score = 30.7 bits (66), Expect = 0.94
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +2
Query: 107 HQFVLSQNLVGLLIGKHGSFVTQIKAKTGASVYVRRHPES 226
++F + +G LIGK+G+ + +IK + V+ R+ E+
Sbjct: 83 YKFEMPSKDIGFLIGKNGAKINEIKLSSNVDVHFERNNEN 122
>Z68222-9|CAE46689.1| 631|Caenorhabditis elegans Hypothetical
protein F58G6.5c protein.
Length = 631
Score = 28.3 bits (60), Expect(2) = 1.2
Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Frame = -2
Query: 551 VQRRHTGFW--TCGHSREARQRGNVGCRGC 468
VQ TG CG SR R G + C GC
Sbjct: 142 VQSEFTGLKCRVCGDSRAGRHYGTIACNGC 171
Score = 20.6 bits (41), Expect(2) = 1.2
Identities = 11/37 (29%), Positives = 14/37 (37%)
Frame = -2
Query: 479 CRGC*RKKCPALTRHVNIVSLFTDSTNCNCKNSGMRG 369
CR C +KC + V D N K+S G
Sbjct: 203 CRACRLRKCFTVGMDARAVQSERDKHKKNPKDSNNEG 239
>Z68217-11|CAE46673.1| 631|Caenorhabditis elegans Hypothetical
protein F58G6.5c protein.
Length = 631
Score = 28.3 bits (60), Expect(2) = 1.2
Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Frame = -2
Query: 551 VQRRHTGFW--TCGHSREARQRGNVGCRGC 468
VQ TG CG SR R G + C GC
Sbjct: 142 VQSEFTGLKCRVCGDSRAGRHYGTIACNGC 171
Score = 20.6 bits (41), Expect(2) = 1.2
Identities = 11/37 (29%), Positives = 14/37 (37%)
Frame = -2
Query: 479 CRGC*RKKCPALTRHVNIVSLFTDSTNCNCKNSGMRG 369
CR C +KC + V D N K+S G
Sbjct: 203 CRACRLRKCFTVGMDARAVQSERDKHKKNPKDSNNEG 239
>Z68222-8|CAC70146.2| 613|Caenorhabditis elegans Hypothetical
protein F58G6.5b protein.
Length = 613
Score = 28.3 bits (60), Expect(2) = 1.2
Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Frame = -2
Query: 551 VQRRHTGFW--TCGHSREARQRGNVGCRGC 468
VQ TG CG SR R G + C GC
Sbjct: 124 VQSEFTGLKCRVCGDSRAGRHYGTIACNGC 153
Score = 20.6 bits (41), Expect(2) = 1.2
Identities = 11/37 (29%), Positives = 14/37 (37%)
Frame = -2
Query: 479 CRGC*RKKCPALTRHVNIVSLFTDSTNCNCKNSGMRG 369
CR C +KC + V D N K+S G
Sbjct: 185 CRACRLRKCFTVGMDARAVQSERDKHKKNPKDSNNEG 221
>Z68217-10|CAC70099.2| 613|Caenorhabditis elegans Hypothetical
protein F58G6.5b protein.
Length = 613
Score = 28.3 bits (60), Expect(2) = 1.2
Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Frame = -2
Query: 551 VQRRHTGFW--TCGHSREARQRGNVGCRGC 468
VQ TG CG SR R G + C GC
Sbjct: 124 VQSEFTGLKCRVCGDSRAGRHYGTIACNGC 153
Score = 20.6 bits (41), Expect(2) = 1.2
Identities = 11/37 (29%), Positives = 14/37 (37%)
Frame = -2
Query: 479 CRGC*RKKCPALTRHVNIVSLFTDSTNCNCKNSGMRG 369
CR C +KC + V D N K+S G
Sbjct: 185 CRACRLRKCFTVGMDARAVQSERDKHKKNPKDSNNEG 221
>AC024089-1|AAK09071.1| 641|Caenorhabditis elegans Hypothetical
protein C36E6.1b protein.
Length = 641
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 125 QNLVGLLIGKHGSFVTQIKAKTGASVYVRRHPESS 229
+ VGL+IG++G+ V I K+G V V P S+
Sbjct: 63 EQCVGLVIGRNGAEVQAISQKSGCRVQVTVQPSST 97
>AF273780-1|AAG15129.1| 509|Caenorhabditis elegans nuclear receptor
NHR-34 protein.
Length = 509
Score = 27.5 bits (58), Expect(2) = 2.0
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -2
Query: 521 CGHSREARQRGNVGCRGC 468
CG SR R G + C GC
Sbjct: 32 CGDSRAGRHYGTIACNGC 49
Score = 20.6 bits (41), Expect(2) = 2.0
Identities = 11/37 (29%), Positives = 14/37 (37%)
Frame = -2
Query: 479 CRGC*RKKCPALTRHVNIVSLFTDSTNCNCKNSGMRG 369
CR C +KC + V D N K+S G
Sbjct: 81 CRACRLRKCFTVGMDARAVQSERDKHKKNPKDSNNEG 117
>Z68217-4|CAA92467.2| 499|Caenorhabditis elegans Hypothetical
protein F58G6.5a protein.
Length = 499
Score = 27.5 bits (58), Expect(2) = 2.1
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -2
Query: 521 CGHSREARQRGNVGCRGC 468
CG SR R G + C GC
Sbjct: 22 CGDSRAGRHYGTIACNGC 39
Score = 20.6 bits (41), Expect(2) = 2.1
Identities = 11/37 (29%), Positives = 14/37 (37%)
Frame = -2
Query: 479 CRGC*RKKCPALTRHVNIVSLFTDSTNCNCKNSGMRG 369
CR C +KC + V D N K+S G
Sbjct: 71 CRACRLRKCFTVGMDARAVQSERDKHKKNPKDSNNEG 107
>Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical
protein R11A8.7b protein.
Length = 2584
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 143 LIGKHGSFVTQIKAKTGASVYVRRHPESSKQ 235
+IGK GS V ++ TGA + + + ES+KQ
Sbjct: 1808 VIGKGGSNVNAVREATGAIIEINKIQESNKQ 1838
>Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical
protein R11A8.7a protein.
Length = 2606
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 143 LIGKHGSFVTQIKAKTGASVYVRRHPESSKQ 235
+IGK GS V ++ TGA + + + ES+KQ
Sbjct: 1808 VIGKGGSNVNAVREATGAIIEINKIQESNKQ 1838
>Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical
protein R11A8.7d protein.
Length = 1427
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 143 LIGKHGSFVTQIKAKTGASVYVRRHPESSKQ 235
+IGK GS V ++ TGA + + + ES+KQ
Sbjct: 629 VIGKGGSNVNAVREATGAIIEINKIQESNKQ 659
>Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical
protein R11A8.7c protein.
Length = 1405
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 143 LIGKHGSFVTQIKAKTGASVYVRRHPESSKQ 235
+IGK GS V ++ TGA + + + ES+KQ
Sbjct: 629 VIGKGGSNVNAVREATGAIIEINKIQESNKQ 659
>Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical protein
R11A8.7b protein.
Length = 2584
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 143 LIGKHGSFVTQIKAKTGASVYVRRHPESSKQ 235
+IGK GS V ++ TGA + + + ES+KQ
Sbjct: 1808 VIGKGGSNVNAVREATGAIIEINKIQESNKQ 1838
>Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical protein
R11A8.7a protein.
Length = 2606
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 143 LIGKHGSFVTQIKAKTGASVYVRRHPESSKQ 235
+IGK GS V ++ TGA + + + ES+KQ
Sbjct: 1808 VIGKGGSNVNAVREATGAIIEINKIQESNKQ 1838
>AC084158-25|AAM15620.2| 384|Caenorhabditis elegans Hypothetical
protein Y69A2AR.32a protein.
Length = 384
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 128 NLVGLLIGKHGSFVTQIKAKTGASVYVR 211
N VG ++G G V Q++ +TG ++VR
Sbjct: 86 NFVGRILGPRGMTVKQLEKETGCRIFVR 113
>AL132949-9|CAB61081.1| 254|Caenorhabditis elegans Hypothetical
protein Y53F4B.11 protein.
Length = 254
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +2
Query: 41 SEAASPPPASLNIVPTETDLRIHQFVLSQNLVGLLIGKHGSFVTQIKAKTGASVY 205
++ A+PPP VP D +H V L + G F ++KAK +VY
Sbjct: 54 AKRAAPPPG----VPDAADFPLHDIVKELGLDKPVDGTDPEFYEELKAKDANTVY 104
>AC006714-9|AAK29714.5| 430|Caenorhabditis elegans Patterned
expression site protein 4 protein.
Length = 430
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +2
Query: 137 GLLIGKHGSFVTQIKAKTGASVYVRRH--PESSKQKI 241
G LIGK GS + I+ TGAS+ V P S+++ +
Sbjct: 165 GSLIGKGGSKIKDIREATGASIQVASEMLPHSTERAV 201
>U88174-6|AAB42272.1| 680|Caenorhabditis elegans Hypothetical
protein M01A10.1 protein.
Length = 680
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +2
Query: 80 VPTETDLRIHQFVLSQNLVGLLIGKHGSFVTQIKAKTGASVYVRRHPESS 229
V T T + + + VGL+IG++G + I K+G V + P ++
Sbjct: 139 VDTSTTVIKASVSIPEESVGLVIGRNGVEIQAISQKSGCRVQIVAEPSTT 188
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,508,396
Number of Sequences: 27780
Number of extensions: 298824
Number of successful extensions: 784
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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