Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0215
         (666 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    29   0.80 
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    27   1.8  
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    26   4.2  

>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 28.7 bits (61), Expect = 0.80
 Identities = 17/80 (21%), Positives = 36/80 (45%)
 Frame = +2

Query: 107 QITAVVTSQCTKNNAEDKVPEVEAALRTFGNCLKGLVDLNVLKTEIEEASQTVHSTRFSR 286
           +I   ++ Q   +  E+K  + +      G     + ++  L++EIEE  +T+HS +F  
Sbjct: 599 EIRISLSVQSINDLTENKKIKTKTLKSYSGTFASMISEIKALESEIEENRKTLHSLQFGS 658

Query: 287 STVTRVLN*KAVSARCCRAC 346
           +   + +    V    C+ C
Sbjct: 659 TFYEKAIE-ICVDQHACQLC 677


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
 Frame = +1

Query: 271 DEVFKKYCDKSAQLKGCISSVLQGVRPCVGNEYANHINDAQTXPXTXRFGXYKDGXRIVC 450
           D++F      S Q++ C+ +V     P   NEY   I++        RF   K   +  C
Sbjct: 586 DDIF--VTTNSEQIQNCVLNVPMYGPPTENNEYCEEISEKYPITPVSRFAYAKTKLKSTC 643

Query: 451 --SSRK 462
             +SRK
Sbjct: 644 AKASRK 649


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -2

Query: 419 PKRXVIGLVWASLMWFAYSLPTQGRTPCSTELIQP 315
           P   +  L WAS+  FAY LP     P +T    P
Sbjct: 121 PVSNIDWLQWASVPLFAYDLPPDPSNPNATSSSPP 155



 Score = 25.8 bits (54), Expect = 5.6
 Identities = 17/65 (26%), Positives = 28/65 (43%)
 Frame = +2

Query: 113 TAVVTSQCTKNNAEDKVPEVEAALRTFGNCLKGLVDLNVLKTEIEEASQTVHSTRFSRST 292
           T+V  +   +NN E+   + +       N  +G+V LN   T++ EA      TR     
Sbjct: 447 TSVSHNTYRQNNLEELKNQNDYLTSQITNLEEGMVMLNKENTKLSEALSNHRVTRSEMEE 506

Query: 293 VTRVL 307
            T +L
Sbjct: 507 ATEIL 511


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,617,354
Number of Sequences: 5004
Number of extensions: 49455
Number of successful extensions: 122
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)