Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0215
         (666 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0965 + 21915842-21916906                                         29   4.4  
07_01_0497 + 3731842-3732386,3732487-3732808,3733232-3733474           28   7.7  
04_04_0751 - 27769616-27769684,27769795-27769917,27769998-277707...    28   7.7  

>10_08_0965 + 21915842-21916906
          Length = 354

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/52 (28%), Positives = 29/52 (55%)
 Frame = -2

Query: 593 IQRSSHQLWAFSQGQVWRIPQWEVCSNLKACLRFSVFCGSTQAAFRDEQTIR 438
           + ++S +  A  +  + R+P + + S+L A  + S  C   Q+AFRD+  +R
Sbjct: 92  VGKASAERAAEMERLISRLPLFTLASSLAALPKSSRDCAVCQSAFRDDDELR 143


>07_01_0497 + 3731842-3732386,3732487-3732808,3733232-3733474
          Length = 369

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 458 GRRPECFHKRLRISDMLLNLNRLPTXESAILDLVKMPKVD 577
           G RP+ F + L   D+++N+N  P      L L   P  D
Sbjct: 208 GLRPDYFERDLTAGDVIINVNHYPPCPDPSLTLGLPPHCD 247


>04_04_0751 - 27769616-27769684,27769795-27769917,27769998-27770770,
            27771407-27771773,27772104-27772217,27772307-27772403,
            27772968-27773088,27773168-27773252,27773349-27773498,
            27773630-27773746,27773819-27773905,27773981-27774049,
            27774125-27774181,27774266-27774349,27774477-27774513,
            27774721-27774869,27776053-27776538,27776743-27776886,
            27776961-27777509,27778332-27778526,27779226-27779310,
            27779570-27779670,27779689-27780360,27781101-27781433,
            27781957-27782038,27782258-27782334,27782713-27782817,
            27783810-27783944,27784437-27785159,27785882-27786663,
            27787480-27789187
          Length = 2891

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +2

Query: 89   LADDFSQITAVVTSQCTKNNAEDKVPEVEAALRTFGNCLKGLVD 220
            +AD   QI+A V  + T   A +    V+ A  ++G+C+  L +
Sbjct: 1320 MADSNGQISAAVMERLTSAAAAEPYESVKHAFVSYGSCIADLAE 1363


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,699,496
Number of Sequences: 37544
Number of extensions: 343170
Number of successful extensions: 846
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)