Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0215
         (666 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56175| Best HMM Match : RRM_1 (HMM E-Value=0.27)                    29   4.5  
SB_24771| Best HMM Match : RVT_1 (HMM E-Value=0)                       28   7.9  
SB_40843| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_56175| Best HMM Match : RRM_1 (HMM E-Value=0.27)
          Length = 601

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
 Frame = +2

Query: 32  FLVTMMWKTVLITIFAAGVLADDFSQITAVVTSQCTKNNAEDKVPEVEAALRTFGNCLKG 211
           FL  +     ++++   GV  D +S I  +V      N A D + EVE A R        
Sbjct: 284 FLKVLKGAGAVLSVIGIGV--DLYSIINTLVECDKKSNQAADAIKEVEKAEREVSKSETE 341

Query: 212 LVDLNV-LKTEIEE 250
           L D N  LKT + E
Sbjct: 342 LRDFNTELKTFMRE 355


>SB_24771| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 1387

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = -2

Query: 377  WFAYSLPTQGRTPCST-ELIQPFS*ALLSQYFLKTSSSAPFGWLLQFRFSEHLNRPV 210
            W AY  P     PC+T     PF   +   Y +  S   P+G+ + +   +++  P+
Sbjct: 1204 WSAYGAPPTQELPCATCGFKAPFGLQVPYGYSVPCSLQTPYGYPVPYGLQKNIVLPI 1260


>SB_40843| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 333

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +2

Query: 194 GNCLKGLVDLNVLKTEIEE 250
           GNCLKG+V++NV    IE+
Sbjct: 277 GNCLKGIVNVNVSPNIIEQ 295


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,356,229
Number of Sequences: 59808
Number of extensions: 385566
Number of successful extensions: 802
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)