Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0215
         (666 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF020769-1|AAB91994.1|  160|Homo sapiens cardiac ventricular tro...    31   4.9  
U28413-1|AAA82605.1|  396|Homo sapiens CSA protein protein.            30   6.5  
CR536563-1|CAG38800.1|  396|Homo sapiens CKN1 protein.                 30   6.5  
BT020021-1|AAV38824.1|  396|Homo sapiens Cockayne syndrome 1 (cl...    30   6.5  
AY213194-1|AAO21128.1|  396|Homo sapiens Cockayne syndrome 1 (cl...    30   6.5  

>AF020769-1|AAB91994.1|  160|Homo sapiens cardiac ventricular
           troponin C protein.
          Length = 160

 Score = 30.7 bits (66), Expect = 4.9
 Identities = 14/56 (25%), Positives = 29/56 (51%)
 Frame = +2

Query: 98  DFSQITAVVTSQCTKNNAEDKVPEVEAALRTFGNCLKGLVDLNVLKTEIEEASQTV 265
           DF +   ++  +C K++++ K  E+    R F     G +DL+ LK  ++   +T+
Sbjct: 73  DFDEFLVMMV-RCMKDDSKGKSEELSDLFRMFDKNADGYIDLDELKIMLQATGETI 127


>U28413-1|AAA82605.1|  396|Homo sapiens CSA protein protein.
          Length = 396

 Score = 30.3 bits (65), Expect = 6.5
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 575 QLWAFSQGQVWRIPQWEVCSNLKACLRFSVFCG 477
           +LW  S G+   +   +VC+N K  L+F+V CG
Sbjct: 270 RLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCG 302


>CR536563-1|CAG38800.1|  396|Homo sapiens CKN1 protein.
          Length = 396

 Score = 30.3 bits (65), Expect = 6.5
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 575 QLWAFSQGQVWRIPQWEVCSNLKACLRFSVFCG 477
           +LW  S G+   +   +VC+N K  L+F+V CG
Sbjct: 270 RLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCG 302


>BT020021-1|AAV38824.1|  396|Homo sapiens Cockayne syndrome 1
           (classical) protein.
          Length = 396

 Score = 30.3 bits (65), Expect = 6.5
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 575 QLWAFSQGQVWRIPQWEVCSNLKACLRFSVFCG 477
           +LW  S G+   +   +VC+N K  L+F+V CG
Sbjct: 270 RLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCG 302


>AY213194-1|AAO21128.1|  396|Homo sapiens Cockayne syndrome 1
           (classical) protein.
          Length = 396

 Score = 30.3 bits (65), Expect = 6.5
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 575 QLWAFSQGQVWRIPQWEVCSNLKACLRFSVFCG 477
           +LW  S G+   +   +VC+N K  L+F+V CG
Sbjct: 270 RLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCG 302


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,806,998
Number of Sequences: 237096
Number of extensions: 1868035
Number of successful extensions: 7715
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7715
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7535049140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)