Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0215
         (666 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g38750.1 68417.m05488 expressed protein                             31   0.91 
At1g29880.1 68414.m03652 glycyl-tRNA synthetase / glycine--tRNA ...    29   2.1  
At1g71210.1 68414.m08217 pentatricopeptide (PPR) repeat-containi...    29   2.8  
At5g60590.2 68418.m07599 yrdC protein-related                          29   3.7  
At5g60590.1 68418.m07598 yrdC protein-related                          29   3.7  
At4g12680.1 68417.m01992 expressed protein ; expression supporte...    28   4.9  
At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel...    28   4.9  
At5g01950.1 68418.m00114 leucine-rich repeat transmembrane prote...    28   6.4  

>At4g38750.1 68417.m05488 expressed protein 
          Length = 1073

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -2

Query: 584 SSHQLWAFSQGQV-WRIPQWEVCSNLKACLRFSVF 483
           +SH+ W ++ G + W++   +V   +K CLRFS F
Sbjct: 26  ASHEYWKYNHGNMRWKVTL-KVIELMKTCLRFSKF 59


>At1g29880.1 68414.m03652 glycyl-tRNA synthetase / glycine--tRNA
           ligase identical to SP|O23627 Glycyl-tRNA synthetase (EC
           6.1.1.14) (Glycine--tRNA ligase) (GlyRS) {Arabidopsis
           thaliana}
          Length = 729

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 19/67 (28%), Positives = 31/67 (46%)
 Frame = +2

Query: 107 QITAVVTSQCTKNNAEDKVPEVEAALRTFGNCLKGLVDLNVLKTEIEEASQTVHSTRFSR 286
           QI    T Q  + +  +K   VEA     GN ++ L      K EI+ A + ++  +  +
Sbjct: 37  QIPMDATEQSLRQSLSEKSSSVEAQ----GNAVRALKASRAAKPEIDAAIEQLNKLKLEK 92

Query: 287 STVTRVL 307
           STV + L
Sbjct: 93  STVEKEL 99


>At1g71210.1 68414.m08217 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 879

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = +2

Query: 65  ITIFAAGVLADDFSQITAVVTSQCTKNNAEDKVPEVEAALRTFGNCLKGLVDLNVLKTEI 244
           IT F   VL  +  +   V  +     N EDK+PE+++     G    G +D+ V    +
Sbjct: 740 ITAFIGNVLLHNAMKSKGVYEAWTRMRNIEDKIPEMKSLGELIG-LFSGRIDMEVELKRL 798

Query: 245 EE 250
           +E
Sbjct: 799 DE 800


>At5g60590.2 68418.m07599 yrdC protein-related
          Length = 288

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
 Frame = -2

Query: 617 VGXFRGFPIQRSSHQL-WAFSQGQVWRIPQWEVCSNLKACL---RFSVFCGSTQAAFRDE 450
           V   R F I   S +L W   +  VW + + E C   K+CL       +      A + E
Sbjct: 27  VSELRCFSIANQSRRLRWGLQKKMVWSLERAETCVVSKSCLVHPATEAYAQEAIEAIKSE 86

Query: 449 QTIRXPS 429
           + I  P+
Sbjct: 87  KVIAVPT 93


>At5g60590.1 68418.m07598 yrdC protein-related
          Length = 164

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
 Frame = -2

Query: 617 VGXFRGFPIQRSSHQL-WAFSQGQVWRIPQWEVCSNLKACL---RFSVFCGSTQAAFRDE 450
           V   R F I   S +L W   +  VW + + E C   K+CL       +      A + E
Sbjct: 27  VSELRCFSIANQSRRLRWGLQKKMVWSLERAETCVVSKSCLVHPATEAYAQEAIEAIKSE 86

Query: 449 QTIRXPS 429
           + I  P+
Sbjct: 87  KVIAVPT 93


>At4g12680.1 68417.m01992 expressed protein ; expression supported
           by MPSS
          Length = 590

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +2

Query: 491 RISDMLLNLNRLPTXESAILDLVKMPKVDEMTSG-SGILEXXPPNPNMGDTG 643
           R+  M+ +++R+PT     ++LVK+  ++ +  G SG        PN   TG
Sbjct: 526 RLQGMVASMSRIPTFRRRFMNLVKVLYIEALEMGASGNRAGGILKPNSDQTG 577


>At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-related
            contains Pfam PF02138: Beige/BEACH domain; contains Pfam
            PF00400: WD domain, G-beta repeat (3 copies)
          Length = 2946

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +2

Query: 89   LADDFSQITAVVTSQCTKNNAEDKVPEVEAALRTFGNCLKGLVD 220
            +AD   QI+AV   + T  +A +    V  A  ++G+C   L +
Sbjct: 1443 MADSSGQISAVAMERLTAASAAEPYESVSCAFVSYGSCAMDLAE 1486


>At5g01950.1 68418.m00114 leucine-rich repeat transmembrane protein
           kinase, putative receptor protein kinases
          Length = 1032

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +2

Query: 410 IALGATRTXTGLFVHRGRRPECFHKRLRISDMLLNLN 520
           +ALGA +    L++H    P  FH+ ++ S++LL+ N
Sbjct: 808 VALGAAKGI--LYLHTEANPPVFHRDIKASNILLDPN 842


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,079,664
Number of Sequences: 28952
Number of extensions: 273741
Number of successful extensions: 735
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)